MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:43.7 nTPM
HPA Brain:159.3 nTPM
GTEx:43.7 nTPM
FANTOM5:10.8 Scaled Tags Per Million
Pig:95.2 nTPM
Mouse:112.1 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 159.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 128.2
2586 Male, age 75, left hemisphere 187.4
2666 Male, age 74, left hemisphere 151.3
2019 Male, age 18, unknown 148.5
2219 Male, age 76, both hemispheres 133.7
2828 Female, age 72, unknown 131.1
1827 Male, age 72, unknown 119.1
1870 Female, age 42, unknown 110.8
1833 Male, age 53, unknown 107.7
1830 Male, age 51, unknown 98.8
2411 Female, age 72, unknown 94.1
Dorsal raphe nucleus
nTPM: 98.1
2047 Male, age 72, unknown 110.4
2750 Male, age 76, both hemispheres 106.7
1828 Male, age 53, unknown 100.3
2298 Female, age 72, unknown 99.0
2016 Female, age 72, unknown 74.4
Inferior colliculus
nTPM: 143.2
2849 Male, age 72, unknown 186.4
1848 Female, age 42, unknown 152.5
2097 Female, age 72, unknown 124.5
1890 Male, age 53, unknown 109.2
Median raphe nucleus
nTPM: 135.3
2220 Male, age 76, midline 135.3
Periaquaductal grey, anterior
nTPM: 159.3
2502 Female, age 75, unknown 221.0
1795 Male, age 51, unknown 133.3
1947 Male, age 18, unknown 123.4
Periaquaductal grey, dorsal
nTPM: 112.4
1840 Male, age 53, unknown 135.3
2464 Female, age 72, unknown 123.9
2850 Male, age 76, both hemispheres 105.2
1831 Male, age 72, unknown 85.3
Periaquaductal grey, lateral
nTPM: 80.2
2140 Male, age 76, both hemispheres 99.3
2053 Male, age 18, unknown 79.9
2272 Male, age 74, both hemispheres 61.4
Pretectal area
nTPM: 151.0
1817 Female, age 42, unknown 240.3
1944 Female, age 72, unknown 224.1
2007 Male, age 72, unknown 217.7
1816 Male, age 51, unknown 202.2
1815 Male, age 53, unknown 170.4
2667 Female, age 75, unknown 164.8
2825 Male, age 18, unknown 110.2
2224 Female, age 72, unknown 103.5
2407 Male, age 75, both hemispheres 86.9
2316 Male, age 76, right hemisphere 85.0
2273 Male, age 74, both hemispheres 56.3
Red nucleus
nTPM: 91.1
2785 Male, age 18, unknown 167.1
2584 Male, age 75, left hemisphere 140.2
2769 Male, age 72, unknown 92.9
1954 Female, age 42, unknown 91.2
2227 Male, age 72, unknown 90.9
2588 Male, age 74, left hemisphere 90.8
1865 Male, age 51, unknown 77.6
2823 Male, age 76, right hemisphere 77.3
2503 Female, age 72, unknown 76.2
1904 Male, age 53, unknown 72.0
1821 Female, age 72, unknown 71.8
2725 Female, age 75, unknown 45.4
Substantia nigra
nTPM: 98.7
1889 Female, age 72, unknown 179.4
2665 Male, age 74, both hemispheres 164.7
1941 Male, age 53, unknown 128.3
1916 Female, age 42, unknown 98.5
1851 Male, age 51, unknown 87.7
2583 Male, age 75, right hemisphere 75.2
2241 Male, age 72, unknown 65.9
2699 Male, age 18, unknown 63.5
2409 Female, age 72, unknown 63.2
2590 Female, age 75, unknown 60.4
Superior colliculus
nTPM: 138.0
2668 Female, age 75, unknown 219.6
2087 Female, age 72, unknown 173.8
2664 Male, age 75, both hemispheres 170.2
1895 Male, age 76, right hemisphere 144.9
1839 Male, age 51, unknown 133.6
2261 Male, age 18, unknown 127.7
1796 Male, age 53, unknown 114.4
1913 Female, age 42, unknown 101.5
2587 Male, age 74, left hemisphere 101.2
1995 Male, age 72, unknown 93.2
Ventral tegmental area
nTPM: 93.1
2218 Male, age 76, both hemispheres 118.0
1942 Male, age 51, unknown 105.5
1915 Female, age 42, unknown 93.3
2021 Male, age 53, unknown 87.3
2410 Female, age 72, unknown 84.3
2223 Female, age 72, unknown 70.4

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 43.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 43.7
Samples: 183

Max nTPM: 174.6
Min nTPM: 2.6
Std nTPM: 29.3
Median nTPM: 37.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 174.6
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 128.6
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 117.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 112.1
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 109.7
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 104.1
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 103.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 98.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 98.0
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 94.8
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 89.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 10.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 10.8
FF:10158-103A5 76 years, female 10.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 95.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 43.8
Samples: 4

Max nTPM: 61.8
Min nTPM: 22.5
Sample A Female 61.8
Sample B Female 31.5
Sample C Male 59.5
Sample D Male 22.5
Midbrain
nTPM: 83.4
Samples: 4

Max nTPM: 172.7
Min nTPM: 16.9
Sample A Female 16.9
Sample B Female 45.2
Sample C Male 172.7
Sample D Male 98.7
Periaqueductal gray
nTPM: 52.4
Samples: 3

Max nTPM: 63.3
Min nTPM: 44.9
Sample B Female 49.1
Sample C Male 63.3
Sample D Male 44.9
Superior colliculi
nTPM: 95.2
Samples: 4

Max nTPM: 134.4
Min nTPM: 44.5
Sample A Female 92.6
Sample B Female 44.5
Sample C Male 134.4
Sample D Male 109.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 112.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 112.1
Samples: 4

Max nTPM: 127.9
Min nTPM: 103.4
Sample A Male 127.9
Sample B Male 112.8
Sample C Female 103.4
Sample D Female 104.2

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