Evolutionary view of RPN1 across human, pig, rat, mouse and macaque - Staining in retina

RETINA - Expression summary

Protein expressionⁱ

No data

RNA expressionⁱ

Consensus:	43.4	nTPM
GTEx:	43.4	nTPM
FANTOM5:	209.6	Scaled Tags Per Million

Macaque:	67.1	nTPM
Mouse:	50.5	nTPM
Rat:	77.1	nTPM
Pig:	60.4	nTPM

EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	43.4

GTEx sample id

Sample description

nTPM

Retina
Average nTPM: 43.4

Samples: 105

Max nTPM: 63.0
Min nTPM: 32.1
Std nTPM: 5.9
Median nTPM:

308_1	70 years, female	63.0
173_1	67 years, male	55.9
347_1	72 years, male	55.3
321_1	62 years, female	53.9
99_1	64 years, male	52.9
293_1	68 years, female	52.7
137_1	83 years, male	51.9
177_1	74 years, male	51.9
317_1	60 years, male	51.8
375_1	74 years, female	51.8
384_1	83 years, male	51.3
189_1	76 years, male	51.2
172_1	72 years, female	50.5
307_1	66 years, female	50.5
377_1	82 years, female	50.1
2_1	77 years, female	49.8
243_1	75 years, male	49.5
526_1	61 years, male	48.7
246_1	77 years, male	48.6
386_1	76 years, male	48.4
35_1	74 years, female	48.3
322_1	76 years, male	48.3
9_1	66 years, female	48.1
389_1	86 years, female	47.6
266_1	85 years, male	47.5
319_1	81 years, male	47.4
251_1	78 years, male	47.2
495_1	57 years, female	47.0
353_1	82 years, female	46.8
218_1	71 years, female	46.6
356_1	87 years, female	46.6
126_1	63 years, male	46.5
163_1	78 years, male	46.3
229_1	69 years, female	46.3
404_1	82 years, female	46.3
506_1	65 years, male	46.3
17_1	71 years, male	46.0
237_1	82 years, male	45.9
145_1	84 years, male	45.7
480_1	63 years, male	45.7
406_1	79 years, male	45.5
349_1	83 years, male	45.2
42_1	85 years, male	45.1
355_1	70 years, female	45.0
6_1	73 years, female	44.9
335_1	73 years, female	44.8
394_1	75 years, female	44.8
313_1	79 years, female	44.7
350_1	84 years, female	44.4
4_1	88 years, female	44.3
318_1	68 years, male	43.6
311_1	78 years, male	43.4
351_1	91 years, male	43.4
468_1	89 years, male	43.4
18_1	88 years, male	43.2
452_1	88 years, female	43.2
405_1	91 years, male	42.9
320_1	89 years, female	42.5
517_1	88 years, male	42.5
153_1	70 years, female	42.4
425_1	59 years, female	42.3
41_1	94 years, female	41.9
115_1	83 years, male	41.9
295_1	61 years, female	41.6
315_1	62 years, female	41.5
503_1	68 years, male	41.5
499_1	55 years, female	41.4
324_1	76 years, male	40.9
447_1	81 years, male	40.8
415_1	77 years, female	40.4
117_1	61 years, male	40.3
354_1	81 years, female	40.3
109_1	81 years, female	40.1
120_1	70 years, female	39.9
217_1	76 years, male	39.7
139_1	64 years, female	39.6
254_1	77 years, female	39.6
292_1	71 years, male	39.4
413_1	59 years, female	39.2
348_1	84 years, male	38.8
414_1	84 years, female	38.8
162_1	79 years, female	38.2
286_1	68 years, female	38.1
352_1	62 years, male	38.0
466_1	57 years, female	37.7
379_1	60 years, male	37.5
396_1	62 years, male	37.5
264_1	73 years, female	37.2
81_1	67 years, male	37.1
291_1	76 years, male	36.7
119_1	70 years, female	36.4
43_1	64 years, female	36.1
265_1	87 years, male	36.0
316_1	62 years, male	35.6
518_1	75 years, female	35.4
490_1	67 years, female	35.1
314_1	67 years, male	35.0
501_1	88 years, male	35.0
89_1	63 years, male	34.9
32_1	67 years, male	34.7
288_1	66 years, female	34.6
142_1	61 years, female	32.7
376_1	75 years, female	32.5
149_1	88 years, male	32.3
491_1	89 years, female	32.1
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RETINA - FANTOM5 CAGEⁱ

Max subtype Scaled Tags Per Millionⁱ Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.	209.6

FANTOM5 sample id

Sample description

Scaled Tags Per Million

Retina
Scaled Tags Per Million: 209.6

FF:10030-101E3

24-65 years, mixed

209.6

RETINA - Macaque RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	67.1

Macaque sample

Sample description

nTPM

Retina
nTPM: 67.2

Samples: 2

Max nTPM: 82.0
Min nTPM: 52.3

Sample A		52.3
Sample B		82.0

RETINA - Pig RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	60.4

Pig sample

Sample description

nTPM

Retina
nTPM: 60.5

Samples: 4

Max nTPM: 64.7
Min nTPM: 56.8

Sample A	Female	57.7
Sample B	Female	64.7
Sample C	Male	62.6
Sample D	Male	56.8

RETINA - Mouse RNA-seqⁱ

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	50.5

Mouse sample

Sample description

nTPM

Retina
nTPM: 50.5

Samples: 3

Max nTPM: 64.5
Min nTPM: 41.6

Sample D		64.5
Sample B		41.6
Sample C		45.5

RETINA - Rat RNA-seq

Max subtype nTPMⁱ Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.	77.1

Rat sample

Sample description

nTPM

Retina
nTPM: 77.1

Samples: 4

Max nTPM: 79.1
Min nTPM: 74.7

Sample B		74.7
Sample A		79.1
Sample A		78.5
Sample A		76.1