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RPN1
HPA
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Tau score
Brain region
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Tau score
Brain region
Category
Tau score
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Tau score
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Tau score
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Tau score
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ipTM
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Category
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Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • RPN1
INTERACTION INTERACTION METABOLIC PATHWAYS Show tissue menu
N-GLYCAN METABOLISM
Protein interactions
Protein interactions
Methods
Human metabolism
Metabolic proteins
Methods
GENERAL INFORMATIONi

General description of the gene and the encoded protein(s) using information from HGNC and Ensembl, as well as predictions made by the Human Protein Atlas project.

Gene namei

Official gene symbol, which is typically a short form of the gene name, according to HGNC.

RPN1
Synonyms OST1
Gene descriptioni

Full gene name according to HGNC.

Ribophorin I
Protein classi

Assigned HPA protein class(es) for the encoded protein(s).

Read more
Cancer-related genes
Essential proteins
Metabolic proteins
Plasma proteins
Transporters
Predicted locationi

All transcripts of all genes have been analyzed regarding the location(s) of corresponding protein based on prediction methods for signal peptides and transmembrane regions.

  • Genes with at least one transcript predicted to encode a secreted protein, according to prediction methods or to UniProt location data, have been further annotated and classified with the aim to determine if the corresponding protein(s) are secreted or actually retained in intracellular locations or membrane-attached.
  • Remaining genes, with no transcript predicted to encode a secreted protein, will be assigned the prediction-based location(s).

The annotated location overrules the predicted location, so that a gene encoding a predicted secreted protein that has been annotated as intracellular will have intracellular as the final location.

Membrane
Protein evidence Evidence at protein level (all genes)

HUMAN PROTEIN ATLAS INFORMATIONi

Summary of RNA expression analysis and annotation data generated within the Human Protein Atlas project.

Single cell type
expression clusteri

The RNA data was used to cluster genes according to their expression across single cell types. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Non-specific - Secretory pathway (mainly)
Single cell type specificityi

The RNA specificity category is based on mRNA expression levels in the analyzed cell types based on scRNA-seq data from normal tissues. The categories include: cell type enriched, group enriched, cell type enhanced, low cell type specificity and not detected.

Low cell type specificity
Tissue expression
cluster (RNA)i

The RNA data was used to cluster genes according to their expression across tissues. Clusters contain genes that have similar expression patterns, and each cluster has been manually annotated to describe common features in terms of function and specificity.

Epididymis - Mixed function (mainly)
Tissue specificity (RNA)i

The RNA specificity category is based on mRNA expression levels in the consensus dataset which is calculated from the RNA expression levels in samples from HPA and GTEX. The categories include: tissue enriched, group enriched, tissue enhanced, low tissue specificity and not detected.

Low tissue specificity
Subcellular locationi

Main subcellular location based on data generated in the subcellular section of the Human Protein Atlas.

Localized to the Endoplasmic reticulum In addition localized to the Cytosol
Secretome annotationi

All genes with at least one predicted secreted isoform have been annotated and classified with the aim to determine if the corresponding protein(s) are:

  • secreted into blood
  • locally secreted
  • or actually being attached to membrane or retained in intracellular locations like mitochondria, endoplasmatic reticulum (ER), Golgi apparatus or lysosomes.
Not available
GENE INFORMATIONi

Gene information from Ensembl and Entrez, as well as links to available gene identifiers are displayed here. Information was retrieved from Ensembl if not indicated otherwise.

Chromosome 3
Cytoband q21.3
Chromosome location (bp) 128619969 - 128681075
Number of transcriptsi

Number of protein-coding transcripts from the gene as defined by Ensembl.

2
Ensembl ENSG00000163902 (version 109)
Entrez gene 6184
HGNC HGNC:10381
UniProt P04843
GeneCards RPN1
ASSAYSi

Links to data of the different assays available in the Structure & Interaction resource of the Human Protein Atlas. Click on the miniature images to directly get to the respective section.

Interaction Metabolic
INTERACTIONi

In the Interaction part of this page network plots showing the gene's first-level interaction partners according to four different datasets are displayed, including a consensus network plot showing only interactions present in at least two of the datasets. By clicking on nodes the network can be expanded. In the network plots the nodes represent genes and edge color represent the number of datasets the interaction belongs to. In-house generated AlphaFold 3 predicted 3D structures for interactions in the consensus network are displayed by clicking on the blue symbols on the edges.

The highlight bar in the top of the plot can be used to color the nodes according to subcellular location (based on data in the Subcellular section), predicted location (based on signalpeptide and transmembrane region predictions), tissue specificity (based on RNA tissue expression profiles) or proteinclass. For genes categorised as single cell type or group specific the option to highlight interaction partners expressed in the same cell type will also be available in the highlight bar.

Custom highlighting of nodes is possible using the top left Filter option in which a query of choice can be built to for example label all nodes that are tissue enriched in both human and mouse brain or those that belongs to a certain tissue expression cluster. The expression cluster for the gene is stated in the box Human Protein Atlas Information above the network plot. Click on Filter in the top left in the plot to find the query builder and some example queries.

Interactions included are direct interaction and physical associations with high and medium confidence from IntAct, physical multivalidated interactions from BioGRID, interactions with>75% probability from BioPlex and significant physical interactions from OpenCell.

Filter menu »
Fields »
e.g. Brain enriched, Localized to mitochondria, Epididymis - Mixed function

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


Consensus
IntAct
BioGrid
OpenCell
BioPlex
Highlight:
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Subcell location
Predicted location
Cell type specificity
Protein class

Non-commercial use only, subject to AlphaFold3 Output Terms of Use

Interaction:
Color scheme:
Confidence
Antibodies
Interactor
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PAE plot
Number of interactions: 33
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CAMLG6181211
CANX130824238124
CCDC4715750550
CYB5A436130
DAD15681919
DDOST266541080
DNAJB124012114
EIF2AK331667
EMC2179491820
EMC811214558
EMD167294120
FKBP8213366460
HSP90B18579167
MAGT1111251015
MLEC455150
OST4233910
PGRMC1211852834
PGRMC21255202413
POMK14722118
POR8121195
RAB2A221546471
RPN233399602
SCD1362131
SEC61B5131721600
SSR19326260
SSR3417220
SSR44014320
STT3A681970
STT3B15528543
TMPO9671181
VAPA74401141400
VRK23813130
ZC3HAV110565776
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 10 View all protein interaction data in IntAct
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
CAMLG6181211
DAD15681919
DDOST266541080
KRTAP1-30140000
MLEC455150
POMK14722118
SGTA111372642
STT3A681970
STT3B15528543
UBQLN1292146350
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 135
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ABCA300101
ACE2101327800
ANKS1A3413014
ANLN1056820
ANO1000100
ANO620626
APP4431314110
ASB1100400
ATAD3A033310
ATP1A1545351
BET184128510
BMI114188805
CALR3105006
CAMLG6181211
CANX130824238124
CCDC4715750550
CDK91714125190
CFTR3410323600
CLCN7213941
CLEC4D035100
CLEC4E5350043
CLGN5126228
CLPTM1L01410
COL17A106800
CTSB356501
CTSL124007
CTSS007500
CUL3404577120
CYB5A436130
CYB5R395122160
DAD15681919
DDOST266541080
DDR2562600
DDRGK1636717
DERL15254300
DNAJB124012114
DNAJC160014126
DNAJC25001100
DPP40613700
ECT2365530
EGFR18727545806
EIF2AK331667
EMC2179491820
EMC811214558
EMD167294120
ESR1345947900
ESYT115563310
ESYT24236120
FBXO641385052
FKBP8213366460
FRAS101200
HMGCR11710
HSP90B18579167
HSPA538322682586
IGF1R162373115
INSR161854016
ITPR201702
KRAS115414160
LMF203300
MAGT1111251015
MAP1B434872
MFSD1004202
MLEC455150
MMGT1135043160
MYC6690126920
NBAS206110
NTNG112200
NTRK38114000
OS9663120
OST4233910
PDIA5031019
PDZD83024322
PGRMC1211852834
PGRMC21255202413
PHB12713010
PIGU02400
POMK14722118
POR8121195
PRKN1111140500
PSMC13624733314
PSMC23516763415
PSMC539311211925
PTPN1132777118
RAB1B95211910
RAB2A221546471
RAB5C1076007
RAF13242196140
RHOBTB1132702
RPN233399602
RUFY1253200
SCD1362131
SEC61B5131721600
SEC635041518
SENP25181800
SLC15A3053600
SLC4A201610
SLC9A1341102
SOAT13514212
SSR19326260
SSR3417220
SSR44014320
ST7112310
STAB101100
STAU13213371390
STING111222806
STT3A681970
STT3B15528543
SURF415840
TACC15102100
TECR32217100
TEX2301530
TFRC32311210
TMEM109013302
TMPO9671181
TMPRSS11B5057016
TMPRSS2126800
TOR1AIP1272208
TPTE003000
TRPM710703
TUBA1C10335445
UBE2J13341509
UFL111335120
UNC93B142461022
USP11579502
USP49111500
VAPA74401141400
VCP5756348435
VDAC191577222
VDAC28216280
VDAC33332120
VRK23813130
WFS103162220
WWOX476511
YAP13132304100
ZC3HAV110565776
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 65
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ANKHD123970
APBB1441950
CANX130824238124
CAPZB10061336660
CCDC4715750550
CYB5A436130
DAD15681919
DDOST266541080
DMXL1204110
DNAJB124012114
DRG1209271850
DSG2002171
EIF2AK331667
EMC2179491820
EMC39310196
EMC811214558
EMD167294120
FAM241A316616
FKBP8213366460
HSP90B18579167
KAT6A2126150
KRTCAP2304260
LAS1L3023250
MAGT1111251015
METAP22331295
MLEC455150
MYBL2422171
NFXL110360
NSG1026231
OST4233910
OSTC121120
PACRGL02040
PGRMC1211852834
PGRMC21255202413
PHF8141650
PICALM3224160
PLAGL101450
POR8121195
RAB2A221546471
RACK156991442081
RBM14181258990
RBM8A2612432340
RELA3658174130
RPN233399602
RRP11213115
SCD1362131
SEC24B318100
SEC61B5131721600
SPTLC1237260
SRP19811315310
SRP683644417920
SSR19326260
SSR3417220
SSR44014320
STAU26215180
STT3A681970
STT3B15528543
TMEM432139926
TMPO9671181
TONSL7218526
TPT151519401
VAPA74401141400
VRK23813130
WDR720480
ZC3HAV110565776
Show allShow less
Highlight:
Off
Subcell location
Predicted location
Cell type specificity
Protein class

Number of interactions: 3
Interaction# Consensus# IntAct# BioGrid# OpenCell# BioPlex
ICAM2002031
LRRC32000012
SCCPDH00113
METABOLIC SUMMARYi

In this summary the pathway/subsystems to which the gene belongs is shown together with the associated cellular compartment for the reactions based on metabolite information. The number of proteins and metabolites in the pathway is shown as well as the number of reactions for the selected gene. By clicking on a pathway in the summary table the associated metabolic network map is shown, together with a gene-tissue heatmap that shows the expression of genes in that pathway in different tissues.

Gene RPN1 is associated with 1 reactions in 1 different subsystems, and present in the compartments: Endoplasmic reticulum. Provided by metabolicatlas.org
Pathway / Subsystem Subsystem-associated compartments # proteins # metabolites # reactions for
this protein
N-glycan metabolism Golgi apparatus, Endoplasmic reticulum, Lysosome, Extracellular, Cytosol 69 94 1
PROTEIN INFORMATIONi

The protein information section displays alternative protein-coding transcripts (splice variants) encoded by this gene according to the Ensembl database.

The Splice variant identifier links to the Ensembl website protein summary for the selected splice variant. The data in the Swissprot and TrEMBL columns links to corresponding pages in the UniProt database.

The protein classes assigned to this protein are shown if expanding the data in the protein class column. Parent protein classes are in bold font and subclasses are listed under the parent class.

The length of the protein (amino acid residues according to Ensembl), molecular mass (kDalton), predicted signal peptide and number of predicted transmembrane region(s) according to in-house majority decision methods based on sets of predictors are also reported.

Splice variant SwissProt TrEMBL Protein class Length & mass Signal peptide
(predicted)
Transmembrane regions
(predicted)
RPN1-201 P04843
Metabolic proteins
Transporters
Predicted membrane proteins
Plasma proteins
Cancer-related genes
Mapped to neXtProt
Protein evidence (Kim et al 2014)
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
607 aa
68.6 kDa
Yes 1
RPN1-207 B7Z4L4
Metabolic proteins
Predicted membrane proteins
Cancer-related genes
Essential proteins
Protein evidence (Ezkurdia et al 2014)
Show all
435 aa
49.9 kDa
No 1

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