A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
5.6
nTPM
Monaco:
27.3
nTPM
Schmiedel:
20.9
TPM
NK-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
5.6
HPA sample
nTPM
NK-cell nTPM: 5.6
Samples: 6
Max nTPM: 10.3
Min nTPM: 0.0
P10809_1013
3.4
P10809_1033
5.8
P10809_1052
9.1
P10809_1071
10.3
P10809_1093
0.0
P10809_1103
4.8
NK-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
27.3
Monaco sample
nTPM
NK-cell nTPM: 27.3
Samples: 4
Max nTPM: 31.7
Min nTPM: 24.8
RHH5316_R3683
24.8
RHH5224_R3596
26.9
RHH5253_R3625
25.8
RHH5282_R3654
31.7
NK-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
20.9
Schmiedel sample id
TPM
NK-cell TPM: 20.9
Samples: 90
Max TPM: 32.3
Min TPM: 6.6
NK_1
32.3
NK_2
32.0
NK_3
32.0
NK_4
31.5
NK_5
31.0
NK_6
30.5
NK_7
30.0
NK_8
29.8
NK_9
29.7
NK_10
29.5
NK_11
29.1
NK_12
28.9
NK_13
28.7
NK_14
28.4
NK_15
27.6
NK_16
27.5
NK_17
27.4
NK_18
27.3
NK_19
26.7
NK_20
26.3
NK_21
26.3
NK_22
26.0
NK_23
26.0
NK_24
26.0
NK_25
26.0
NK_26
25.8
NK_27
25.3
NK_28
24.9
NK_29
24.9
NK_30
24.9
NK_31
24.8
NK_32
24.1
NK_33
23.9
NK_34
23.7
NK_35
23.7
NK_36
23.5
NK_37
23.3
NK_38
23.2
NK_39
22.7
NK_40
22.5
NK_41
22.4
NK_42
22.1
NK_43
21.9
NK_44
21.9
NK_45
21.8
NK_46
21.7
NK_47
21.3
NK_48
20.9
NK_49
20.5
NK_50
20.5
NK_51
20.4
NK_52
20.1
NK_53
19.8
NK_54
19.4
NK_55
19.2
NK_56
18.6
NK_57
17.7
NK_58
17.7
NK_59
17.7
NK_60
17.4
NK_61
17.4
NK_62
17.3
NK_63
17.3
NK_64
16.6
NK_65
16.4
NK_66
16.4
NK_67
16.2
NK_68
16.1
NK_69
15.7
NK_70
15.7
NK_71
15.4
NK_72
15.1
NK_73
14.8
NK_74
14.3
NK_75
13.7
NK_76
13.7
NK_77
13.6
NK_78
13.5
NK_79
12.6
NK_80
12.3
NK_81
12.2
NK_82
12.1
NK_83
11.9
NK_84
11.9
NK_85
9.8
NK_86
9.5
NK_87
9.1
NK_88
8.8
NK_89
8.4
NK_90
6.6
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