A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
7.2
nTPM
Monaco:
32.9
nTPM
Schmiedel:
14.8
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
7.2
HPA sample
nTPM
Classical monocyte nTPM: 7.2
Samples: 6
Max nTPM: 8.5
Min nTPM: 5.7
P10809_1003
6.6
P10809_1020
7.2
P10809_1039
8.5
P10809_1058
7.6
P10809_1080
7.6
P10809_1107
5.7
Intermediate monocyte nTPM: 6.3
Samples: 6
Max nTPM: 9.4
Min nTPM: 0.9
P10809_1004
9.4
P10809_1023
8.8
P10809_1042
4.5
P10809_1061
0.9
P10809_1081
8.1
P10809_1108
6.3
Non-classical monocyte nTPM: 7.0
Samples: 5
Max nTPM: 15.3
Min nTPM: 3.3
P10809_1005
7.4
P10809_1053
5.3
P10809_1072
15.3
P10809_1082
3.7
P10809_1109
3.3
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
32.9
Monaco sample
nTPM
Classical monocyte nTPM: 27.5
Samples: 4
Max nTPM: 33.3
Min nTPM: 24.5
RHH5313_R3680
25.9
RHH5221_R3593
26.5
RHH5250_R3622
33.3
RHH5279_R3651
24.5
Intermediate monocyte nTPM: 32.9
Samples: 4
Max nTPM: 42.7
Min nTPM: 21.5
RHH5314_R3681
32.4
RHH5222_R3594
42.7
RHH5251_R3623
34.9
RHH5280_R3652
21.5
Non-classical monocyte nTPM: 27.5
Samples: 4
Max nTPM: 31.9
Min nTPM: 21.0
RHH5315_R3682
31.9
RHH5223_R3595
29.9
RHH5252_R3624
27.3
RHH5281_R3653
21.0
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
14.8
Schmiedel sample id
TPM
Classical monocyte TPM: 14.8
Samples: 91
Max TPM: 21.2
Min TPM: 7.7
MONOCYTES_1
21.2
MONOCYTES_2
20.6
MONOCYTES_3
19.6
MONOCYTES_4
19.3
MONOCYTES_5
19.3
MONOCYTES_6
19.2
MONOCYTES_7
19.0
MONOCYTES_8
19.0
MONOCYTES_9
18.9
MONOCYTES_10
18.8
MONOCYTES_11
18.8
MONOCYTES_12
18.7
MONOCYTES_13
18.4
MONOCYTES_14
18.3
MONOCYTES_15
18.3
MONOCYTES_16
18.2
MONOCYTES_17
18.2
MONOCYTES_18
18.2
MONOCYTES_19
17.9
MONOCYTES_20
17.5
MONOCYTES_21
17.5
MONOCYTES_22
17.4
MONOCYTES_23
17.4
MONOCYTES_24
17.0
MONOCYTES_25
16.9
MONOCYTES_26
16.9
MONOCYTES_27
16.7
MONOCYTES_28
16.7
MONOCYTES_29
16.7
MONOCYTES_30
16.6
MONOCYTES_31
16.6
MONOCYTES_32
16.5
MONOCYTES_33
16.2
MONOCYTES_34
16.1
MONOCYTES_35
16.0
MONOCYTES_36
16.0
MONOCYTES_37
15.6
MONOCYTES_38
15.4
MONOCYTES_39
15.3
MONOCYTES_40
15.3
MONOCYTES_41
15.0
MONOCYTES_42
15.0
MONOCYTES_43
15.0
MONOCYTES_44
15.0
MONOCYTES_45
15.0
MONOCYTES_46
15.0
MONOCYTES_47
14.9
MONOCYTES_48
14.6
MONOCYTES_49
14.6
MONOCYTES_50
14.6
MONOCYTES_51
14.5
MONOCYTES_52
14.5
MONOCYTES_53
14.4
MONOCYTES_54
14.2
MONOCYTES_55
14.1
MONOCYTES_56
14.1
MONOCYTES_57
14.1
MONOCYTES_58
14.1
MONOCYTES_59
14.0
MONOCYTES_60
13.9
MONOCYTES_61
13.8
MONOCYTES_62
13.7
MONOCYTES_63
13.3
MONOCYTES_64
13.2
MONOCYTES_65
13.1
MONOCYTES_66
13.1
MONOCYTES_67
12.9
MONOCYTES_68
12.8
MONOCYTES_69
12.8
MONOCYTES_70
12.7
MONOCYTES_71
12.4
MONOCYTES_72
12.4
MONOCYTES_73
12.4
MONOCYTES_74
12.3
MONOCYTES_75
12.3
MONOCYTES_76
11.9
MONOCYTES_77
11.5
MONOCYTES_78
11.3
MONOCYTES_79
10.9
MONOCYTES_80
10.5
MONOCYTES_81
10.4
MONOCYTES_82
10.3
MONOCYTES_83
10.0
MONOCYTES_84
9.9
MONOCYTES_85
9.8
MONOCYTES_86
9.6
MONOCYTES_87
9.4
MONOCYTES_88
8.9
MONOCYTES_89
8.7
MONOCYTES_90
8.4
MONOCYTES_91
7.7
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Non-classical monocyte TPM: 13.4
Samples: 90
Max TPM: 20.4
Min TPM: 4.2
M2_1
20.4
M2_2
19.4
M2_3
19.4
M2_4
19.2
M2_5
19.1
M2_6
18.7
M2_7
18.3
M2_8
18.2
M2_9
18.0
M2_10
18.0
M2_11
17.8
M2_12
17.6
M2_13
17.5
M2_14
17.4
M2_15
17.4
M2_16
17.2
M2_17
17.0
M2_18
17.0
M2_19
17.0
M2_20
16.8
M2_21
16.8
M2_22
16.2
M2_23
16.2
M2_24
16.1
M2_25
16.0
M2_26
15.9
M2_27
15.9
M2_28
15.7
M2_29
15.6
M2_30
15.6
M2_31
15.5
M2_32
15.3
M2_33
15.2
M2_34
15.1
M2_35
15.1
M2_36
15.0
M2_37
14.9
M2_38
14.9
M2_39
14.6
M2_40
14.6
M2_41
14.6
M2_42
14.6
M2_43
14.3
M2_44
14.3
M2_45
14.3
M2_46
14.3
M2_47
14.3
M2_48
14.0
M2_49
13.8
M2_50
13.6
M2_51
13.3
M2_52
13.2
M2_53
13.0
M2_54
12.9
M2_55
12.9
M2_56
12.8
M2_57
12.4
M2_58
12.3
M2_59
12.0
M2_60
11.7
M2_61
11.6
M2_62
11.6
M2_63
11.4
M2_64
11.3
M2_65
11.2
M2_66
11.1
M2_67
11.0
M2_68
11.0
M2_69
10.9
M2_70
10.6
M2_71
9.8
M2_72
9.4
M2_73
8.9
M2_74
8.9
M2_75
8.9
M2_76
8.7
M2_77
8.3
M2_78
8.1
M2_79
8.1
M2_80
7.9
M2_81
7.9
M2_82
7.8
M2_83
7.8
M2_84
6.7
M2_85
6.6
M2_86
6.5
M2_87
5.7
M2_88
5.6
M2_89
5.0
M2_90
4.2
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