MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:34.9 nTPM
HPA Brain:33.5 nTPM
GTEx:34.9 nTPM
FANTOM5:27.2 Scaled Tags Per Million
Pig:30.5 nTPM
Mouse:48.9 nTPM
Allen mouse:4.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 33.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 30.8
2828 Female, age 72, unknown 34.6
1827 Male, age 72, unknown 34.4
2019 Male, age 18, unknown 33.0
2586 Male, age 75, left hemisphere 32.6
1870 Female, age 42, unknown 31.9
1833 Male, age 53, unknown 30.7
2411 Female, age 72, unknown 30.7
1830 Male, age 51, unknown 28.2
2219 Male, age 76, both hemispheres 26.9
2666 Male, age 74, left hemisphere 25.2
Dorsal raphe nucleus
nTPM: 33.5
2298 Female, age 72, unknown 40.7
2047 Male, age 72, unknown 32.2
2016 Female, age 72, unknown 32.1
2750 Male, age 76, both hemispheres 31.6
1828 Male, age 53, unknown 30.7
Inferior colliculus
nTPM: 30.0
2097 Female, age 72, unknown 33.6
1848 Female, age 42, unknown 30.6
1890 Male, age 53, unknown 30.4
2849 Male, age 72, unknown 25.4
Median raphe nucleus
nTPM: 30.5
2220 Male, age 76, midline 30.5
Periaquaductal grey, anterior
nTPM: 31.4
1795 Male, age 51, unknown 32.7
1947 Male, age 18, unknown 31.4
2502 Female, age 75, unknown 30.2
Periaquaductal grey, dorsal
nTPM: 26.5
2464 Female, age 72, unknown 28.3
1831 Male, age 72, unknown 26.3
1840 Male, age 53, unknown 25.9
2850 Male, age 76, both hemispheres 25.6
Periaquaductal grey, lateral
nTPM: 29.8
2272 Male, age 74, both hemispheres 36.6
2053 Male, age 18, unknown 28.2
2140 Male, age 76, both hemispheres 24.4
Pretectal area
nTPM: 31.6
2273 Male, age 74, both hemispheres 39.3
2007 Male, age 72, unknown 35.7
2667 Female, age 75, unknown 35.1
1817 Female, age 42, unknown 33.8
1815 Male, age 53, unknown 31.8
1816 Male, age 51, unknown 31.2
2825 Male, age 18, unknown 30.4
2224 Female, age 72, unknown 29.5
2407 Male, age 75, both hemispheres 28.1
1944 Female, age 72, unknown 27.9
2316 Male, age 76, right hemisphere 24.8
Red nucleus
nTPM: 32.9
2823 Male, age 76, right hemisphere 36.7
1904 Male, age 53, unknown 35.5
1821 Female, age 72, unknown 34.7
2227 Male, age 72, unknown 34.7
2769 Male, age 72, unknown 34.0
2725 Female, age 75, unknown 33.9
1954 Female, age 42, unknown 33.1
2785 Male, age 18, unknown 32.7
1865 Male, age 51, unknown 31.8
2503 Female, age 72, unknown 30.9
2588 Male, age 74, left hemisphere 28.4
2584 Male, age 75, left hemisphere 28.3
Substantia nigra
nTPM: 29.6
1916 Female, age 42, unknown 34.3
1889 Female, age 72, unknown 33.9
1851 Male, age 51, unknown 32.3
2583 Male, age 75, right hemisphere 31.6
2699 Male, age 18, unknown 30.7
1941 Male, age 53, unknown 30.3
2590 Female, age 75, unknown 26.4
2409 Female, age 72, unknown 26.3
2665 Male, age 74, both hemispheres 25.8
2241 Male, age 72, unknown 24.8
Superior colliculus
nTPM: 29.1
2587 Male, age 74, left hemisphere 32.9
1995 Male, age 72, unknown 30.2
1839 Male, age 51, unknown 30.0
1913 Female, age 42, unknown 29.9
1796 Male, age 53, unknown 29.8
2668 Female, age 75, unknown 29.1
2087 Female, age 72, unknown 28.8
1895 Male, age 76, right hemisphere 28.4
2261 Male, age 18, unknown 27.9
2664 Male, age 75, both hemispheres 24.4
Ventral tegmental area
nTPM: 32.4
2410 Female, age 72, unknown 39.3
1915 Female, age 42, unknown 32.0
1942 Male, age 51, unknown 30.9
2218 Male, age 76, both hemispheres 30.9
2223 Female, age 72, unknown 30.8
2021 Male, age 53, unknown 30.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 34.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 34.9
Samples: 183

Max nTPM: 58.1
Min nTPM: 22.4
Std nTPM: 6.9
Median nTPM: 33.8
GTEX-1IDJH-0011-R2a-SM-GPI9D 70-79 years, male 58.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 57.2
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 54.2
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 54.0
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 53.9
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 51.6
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 50.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 49.7
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 47.1
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 46.9
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 46.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 27.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 27.2
FF:10158-103A5 76 years, female 27.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 30.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 25.5
Samples: 4

Max nTPM: 29.0
Min nTPM: 23.1
Sample A Female 29.0
Sample B Female 24.9
Sample C Male 25.0
Sample D Male 23.1
Midbrain
nTPM: 27.2
Samples: 4

Max nTPM: 37.9
Min nTPM: 23.0
Sample A Female 37.9
Sample B Female 23.1
Sample C Male 24.8
Sample D Male 23.0
Periaqueductal gray
nTPM: 25.3
Samples: 3

Max nTPM: 29.6
Min nTPM: 21.8
Sample B Female 21.8
Sample C Male 29.6
Sample D Male 24.4
Superior colliculi
nTPM: 30.5
Samples: 4

Max nTPM: 37.1
Min nTPM: 25.4
Sample A Female 32.9
Sample B Female 37.1
Sample C Male 26.6
Sample D Male 25.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 48.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 48.9
Samples: 4

Max nTPM: 51.9
Min nTPM: 44.3
Sample A Male 51.9
Sample B Male 44.3
Sample C Female 48.0
Sample D Female 51.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 4.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 4.0
77620381 Antisense, RP_070205_01_E02, Mouse strain C57BL/6J (56 days, male) 4.0

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