MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:40.9 nTPM
HPA Brain:18.1 nTPM
GTEx:40.9 nTPM
FANTOM5:18.1 Scaled Tags Per Million
Pig:17.9 nTPM
Mouse:64.9 nTPM
Allen mouse:0.4 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 18.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 9.8
1870 Female, age 42, unknown 12.5
2219 Male, age 76, both hemispheres 11.7
1833 Male, age 53, unknown 11.3
2019 Male, age 18, unknown 11.0
1827 Male, age 72, unknown 10.2
2828 Female, age 72, unknown 9.8
1830 Male, age 51, unknown 8.9
2411 Female, age 72, unknown 8.7
2666 Male, age 74, left hemisphere 7.6
2586 Male, age 75, left hemisphere 6.6
Dorsal raphe nucleus
nTPM: 9.9
1828 Male, age 53, unknown 11.8
2298 Female, age 72, unknown 11.2
2750 Male, age 76, both hemispheres 10.7
2047 Male, age 72, unknown 9.2
2016 Female, age 72, unknown 6.5
Inferior colliculus
nTPM: 11.0
2849 Male, age 72, unknown 11.7
2097 Female, age 72, unknown 11.1
1848 Female, age 42, unknown 10.6
1890 Male, age 53, unknown 10.6
Median raphe nucleus
nTPM: 18.1
2220 Male, age 76, midline 18.1
Periaquaductal grey, anterior
nTPM: 9.0
1947 Male, age 18, unknown 10.0
2502 Female, age 75, unknown 8.8
1795 Male, age 51, unknown 8.3
Periaquaductal grey, dorsal
nTPM: 9.0
1840 Male, age 53, unknown 10.2
2850 Male, age 76, both hemispheres 9.5
1831 Male, age 72, unknown 8.3
2464 Female, age 72, unknown 8.1
Periaquaductal grey, lateral
nTPM: 8.3
2140 Male, age 76, both hemispheres 9.7
2272 Male, age 74, both hemispheres 7.7
2053 Male, age 18, unknown 7.3
Pretectal area
nTPM: 10.5
1817 Female, age 42, unknown 14.3
2007 Male, age 72, unknown 13.0
2667 Female, age 75, unknown 11.6
1816 Male, age 51, unknown 10.6
2825 Male, age 18, unknown 10.3
1944 Female, age 72, unknown 10.1
1815 Male, age 53, unknown 9.8
2407 Male, age 75, both hemispheres 9.5
2224 Female, age 72, unknown 9.4
2273 Male, age 74, both hemispheres 8.5
2316 Male, age 76, right hemisphere 8.0
Red nucleus
nTPM: 8.7
2725 Female, age 75, unknown 11.8
1821 Female, age 72, unknown 11.1
1865 Male, age 51, unknown 9.7
2584 Male, age 75, left hemisphere 9.2
1954 Female, age 42, unknown 9.0
2823 Male, age 76, right hemisphere 8.9
2785 Male, age 18, unknown 8.4
1904 Male, age 53, unknown 8.3
2503 Female, age 72, unknown 7.7
2769 Male, age 72, unknown 7.2
2588 Male, age 74, left hemisphere 7.0
2227 Male, age 72, unknown 6.1
Substantia nigra
nTPM: 13.4
1916 Female, age 42, unknown 22.6
2241 Male, age 72, unknown 21.8
1889 Female, age 72, unknown 13.5
1851 Male, age 51, unknown 13.2
1941 Male, age 53, unknown 13.0
2409 Female, age 72, unknown 12.9
2699 Male, age 18, unknown 12.0
2665 Male, age 74, both hemispheres 10.7
2590 Female, age 75, unknown 8.1
2583 Male, age 75, right hemisphere 5.7
Superior colliculus
nTPM: 8.4
1895 Male, age 76, right hemisphere 11.6
2587 Male, age 74, left hemisphere 9.1
1913 Female, age 42, unknown 8.8
1839 Male, age 51, unknown 8.6
2087 Female, age 72, unknown 8.6
2668 Female, age 75, unknown 8.5
1796 Male, age 53, unknown 8.0
2261 Male, age 18, unknown 7.9
2664 Male, age 75, both hemispheres 7.2
1995 Male, age 72, unknown 6.1
Ventral tegmental area
nTPM: 11.9
2218 Male, age 76, both hemispheres 15.9
1915 Female, age 42, unknown 14.1
2223 Female, age 72, unknown 12.3
1942 Male, age 51, unknown 10.8
2410 Female, age 72, unknown 10.2
2021 Male, age 53, unknown 8.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 40.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 40.9
Samples: 183

Max nTPM: 80.7
Min nTPM: 20.5
Std nTPM: 10.7
Median nTPM: 39.3
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 80.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 80.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 67.9
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 67.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 66.7
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 65.7
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 65.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 64.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 64.7
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 62.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 59.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 18.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 18.1
FF:10158-103A5 76 years, female 18.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 17.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 17.9
Samples: 4

Max nTPM: 21.7
Min nTPM: 15.1
Sample A Female 21.7
Sample B Female 15.1
Sample C Male 17.2
Sample D Male 17.6
Midbrain
nTPM: 17.7
Samples: 4

Max nTPM: 26.2
Min nTPM: 11.2
Sample A Female 26.2
Sample B Female 18.7
Sample C Male 11.2
Sample D Male 14.6
Periaqueductal gray
nTPM: 14.7
Samples: 3

Max nTPM: 15.8
Min nTPM: 12.5
Sample B Female 15.8
Sample C Male 12.5
Sample D Male 15.7
Superior colliculi
nTPM: 15.2
Samples: 4

Max nTPM: 19.9
Min nTPM: 10.8
Sample A Female 19.9
Sample B Female 10.8
Sample C Male 15.3
Sample D Male 14.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 64.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 65.0
Samples: 4

Max nTPM: 68.6
Min nTPM: 61.8
Sample A Male 66.5
Sample B Male 68.6
Sample C Female 61.8
Sample D Female 62.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.4
74988362 Antisense, RP_060315_05_D05, Mouse strain C57BL/6J (56 days, male) 0.8
70303755 Antisense, RP_050609_02_D06, Mouse strain C57BL/6J (56 days, male) 0.1

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