We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.
Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.
If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.
No data
RNA expressioni
A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.
The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.
Scroll down to view mRNA expression data in more detail.
Consensus:
15.2
nTPM
HPA Brain:
33.3
nTPM
GTEx:
15.2
nTPM
FANTOM5:
41.0
Scaled Tags Per Million
Pig:
22.0
nTPM
Mouse:
24.8
nTPM
Allen mouse:
0.0
Expression energy
MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
33.3
Sample id
Sample description
nTPM
Cuneiform nucleus nTPM: 29.7
2019
Male, age 18, unknown
37.2
1827
Male, age 72, unknown
33.0
2666
Male, age 74, left hemisphere
30.6
1833
Male, age 53, unknown
30.5
1830
Male, age 51, unknown
30.1
2828
Female, age 72, unknown
28.8
2411
Female, age 72, unknown
28.3
1870
Female, age 42, unknown
27.8
2219
Male, age 76, both hemispheres
26.2
2586
Male, age 75, left hemisphere
24.3
Dorsal raphe nucleus nTPM: 30.4
2750
Male, age 76, both hemispheres
33.2
2298
Female, age 72, unknown
30.6
2047
Male, age 72, unknown
30.2
1828
Male, age 53, unknown
29.0
2016
Female, age 72, unknown
28.9
Inferior colliculus nTPM: 29.5
1890
Male, age 53, unknown
33.0
2097
Female, age 72, unknown
30.5
1848
Female, age 42, unknown
29.3
2849
Male, age 72, unknown
25.3
Median raphe nucleus nTPM: 28.2
2220
Male, age 76, midline
28.2
Periaquaductal grey, anterior nTPM: 29.8
1947
Male, age 18, unknown
31.0
2502
Female, age 75, unknown
29.4
1795
Male, age 51, unknown
29.1
Periaquaductal grey, dorsal nTPM: 29.2
2850
Male, age 76, both hemispheres
33.3
2464
Female, age 72, unknown
31.1
1831
Male, age 72, unknown
26.7
1840
Male, age 53, unknown
25.5
Periaquaductal grey, lateral nTPM: 31.1
2140
Male, age 76, both hemispheres
37.9
2272
Male, age 74, both hemispheres
28.0
2053
Male, age 18, unknown
27.4
Pretectal area nTPM: 32.4
1817
Female, age 42, unknown
36.8
2007
Male, age 72, unknown
36.8
2316
Male, age 76, right hemisphere
36.0
1816
Male, age 51, unknown
35.4
1815
Male, age 53, unknown
34.6
1944
Female, age 72, unknown
34.1
2273
Male, age 74, both hemispheres
32.1
2224
Female, age 72, unknown
28.6
2667
Female, age 75, unknown
27.8
2825
Male, age 18, unknown
27.6
2407
Male, age 75, both hemispheres
26.3
Red nucleus nTPM: 33.3
2823
Male, age 76, right hemisphere
38.9
2588
Male, age 74, left hemisphere
37.4
1821
Female, age 72, unknown
36.8
2725
Female, age 75, unknown
34.9
1865
Male, age 51, unknown
33.8
2785
Male, age 18, unknown
33.6
2503
Female, age 72, unknown
32.4
1954
Female, age 42, unknown
32.3
2769
Male, age 72, unknown
31.6
1904
Male, age 53, unknown
30.3
2227
Male, age 72, unknown
29.4
2584
Male, age 75, left hemisphere
28.5
Substantia nigra nTPM: 32.8
2241
Male, age 72, unknown
39.7
1941
Male, age 53, unknown
36.6
1916
Female, age 42, unknown
35.7
1889
Female, age 72, unknown
33.7
1851
Male, age 51, unknown
33.3
2590
Female, age 75, unknown
31.7
2409
Female, age 72, unknown
31.5
2583
Male, age 75, right hemisphere
30.1
2665
Male, age 74, both hemispheres
28.7
2699
Male, age 18, unknown
27.1
Superior colliculus nTPM: 29.5
2261
Male, age 18, unknown
34.8
2668
Female, age 75, unknown
33.6
1796
Male, age 53, unknown
32.9
1895
Male, age 76, right hemisphere
31.2
2087
Female, age 72, unknown
30.9
2587
Male, age 74, left hemisphere
28.9
1995
Male, age 72, unknown
28.2
1913
Female, age 42, unknown
26.5
1839
Male, age 51, unknown
25.0
2664
Male, age 75, both hemispheres
23.4
Ventral tegmental area nTPM: 31.3
2223
Female, age 72, unknown
33.1
1915
Female, age 42, unknown
32.6
2218
Male, age 76, both hemispheres
32.6
1942
Male, age 51, unknown
32.0
2410
Female, age 72, unknown
31.6
2021
Male, age 53, unknown
25.7
MIDBRAIN - GTEx RNA-seqi
RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.
Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
15.2
GTEx sample id
Sample description
nTPM
Brain - Substantia nigra Average nTPM: 15.2
Samples: 139
Max nTPM: 27.4
Min nTPM: 9.7
Std nTPM: 3.3
Median nTPM: 14.7
GTEX-15ER7-0011-R2a-SM-6M46O
20-29 years, female
27.4
GTEX-Z93S-0011-R2a-SM-4RGNG
50-59 years, male
26.9
GTEX-1HFI6-0011-R2a-SM-CMKH5
40-49 years, male
26.1
GTEX-1F75B-0011-R2a-SM-ARL8I
50-59 years, male
25.5
GTEX-1B8L1-0011-R2a-SM-9OSVL
60-69 years, male
23.9
GTEX-1B933-0011-R2b-SM-7IGNM
50-59 years, female
22.2
GTEX-1313W-0011-R2a-SM-5EGLF
50-59 years, female
21.7
GTEX-1IKJJ-0011-R2b-SM-ARZLJ
60-69 years, male
20.9
GTEX-Q2AG-0011-R2A-SM-2HMIT
40-49 years, female
20.8
GTEX-13NYB-0011-R2a-SM-5MR3C
40-49 years, male
20.6
GTEX-X4XX-0011-R2A-SM-3P623
60-69 years, male
20.4
GTEX-NPJ7-0011-R2a-SM-2I3GF
60-69 years, female
20.1
GTEX-145LS-0011-R2a-SM-5PNZI
60-69 years, female
19.9
GTEX-N7MT-0011-R2a-SM-2I3GI
60-69 years, female
19.8
GTEX-N7MS-0011-R2a-SM-2HML6
60-69 years, male
19.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ
50-59 years, male
19.5
GTEX-1F48J-0011-R2a-SM-CL535
50-59 years, female
19.0
GTEX-11DZ1-0011-R2a-SM-DNZZM
50-59 years, male
18.8
GTEX-13SLX-0011-R2b-SM-5S2VP
50-59 years, female
18.6
GTEX-T6MN-0011-R2A-SM-32QOW
50-59 years, male
18.0
GTEX-1GN1U-0011-R2a-SM-CL53A
50-59 years, female
18.0
GTEX-13NYS-0011-R2b-SM-5MR4G
60-69 years, male
17.9
GTEX-1HR98-0011-R2a-SM-ARL7A
60-69 years, male
17.7
GTEX-1GN73-0011-R2a-SM-CJI2V
60-69 years, male
17.5
GTEX-NL4W-0011-R2a-SM-2I5GV
50-59 years, male
17.4
GTEX-14C5O-0011-R2a-SM-5ZZV2
60-69 years, male
17.3
GTEX-14BIM-0011-R2b-SM-69LQ6
60-69 years, female
17.1
GTEX-14JG1-0011-R2a-SM-5ZZVE
40-49 years, male
17.1
GTEX-15CHQ-0011-R2b-SM-6AJAD
60-69 years, male
17.1
GTEX-1IGQW-0011-R2b-SM-D4P26
60-69 years, male
17.1
GTEX-1LVAO-0011-R2a-SM-EYYX1
60-69 years, male
17.1
GTEX-13O3Q-0011-R2b-SM-5KM3K
50-59 years, male
17.0
GTEX-12ZZX-0011-R2a-SM-5EGLG
40-49 years, female
16.9
GTEX-11PRG-0011-R2a-SM-69LQ5
50-59 years, male
16.7
GTEX-1445S-0011-R2b-SM-5PNUH
60-69 years, male
16.6
GTEX-UTHO-0011-R2A-SM-3GIKC
60-69 years, male
16.4
GTEX-1HT8W-0011-R2a-SM-CMKH9
30-39 years, male
16.4
GTEX-T5JC-0011-R2A-SM-32PLZ
20-29 years, male
16.3
GTEX-11GSP-0011-R2b-SM-9QEGE
60-69 years, female
16.3
GTEX-ZAB4-0011-R2a-SM-4RGNP
40-49 years, male
16.2
GTEX-14PN4-0011-R2a-SM-6EU2Y
50-59 years, male
16.1
GTEX-11ZTS-0011-R2b-SM-5BC75
60-69 years, female
15.9
GTEX-1CB4G-0011-R2a-SM-9QEGQ
60-69 years, male
15.9
GTEX-1EKGG-0011-R2a-SM-CE6R8
60-69 years, male
15.9
GTEX-13RTJ-0011-R2a-SM-5PNW9
60-69 years, male
15.8
GTEX-1HB9E-0011-R2b-SM-A96RW
50-59 years, male
15.8
GTEX-1399T-0011-R2b-SM-5DUXM
60-69 years, male
15.6
GTEX-1E1VI-0011-R2a-SM-9QEGS
50-59 years, male
15.6
GTEX-1H23P-0011-R2a-SM-CKZP3
60-69 years, male
15.5
GTEX-1LH75-0011-R2b-SM-EYYWQ
50-59 years, female
15.5
GTEX-13CF2-0011-R2a-SM-5L3DC
60-69 years, male
15.4
GTEX-1A8G7-0011-R2a-SM-7IGQI
60-69 years, male
15.4
GTEX-S7SE-0011-R2A-SM-2XCDC
50-59 years, male
15.4
GTEX-11TUW-0011-R2b-SM-DO92T
60-69 years, male
15.4
GTEX-17HG3-0011-R2a-SM-7MGVX
30-39 years, female
15.4
GTEX-11EMC-0011-R2b-SM-DO114
60-69 years, female
15.3
GTEX-1GN2E-0011-R2a-SM-9WG7D
60-69 years, male
15.3
GTEX-132Q8-0011-R2b-SM-5EQ5Z
60-69 years, male
15.2
GTEX-1EMGI-0011-R2b-SM-9OSVS
60-69 years, male
15.2
GTEX-ZE9C-0011-R2a-SM-4WKGH
60-69 years, male
15.1
GTEX-12WSH-0011-R2a-SM-5GU68
50-59 years, male
15.0
GTEX-1H3O1-0011-R2b-SM-CKZOT
60-69 years, male
15.0
GTEX-1IY9M-0011-R2a-SM-D4P29
60-69 years, male
15.0
GTEX-1B8SG-0011-R2b-SM-79OOT
50-59 years, male
14.9
GTEX-X585-0011-R2B-SM-46MVF
50-59 years, male
14.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q
70-79 years, male
14.9
GTEX-139TS-0011-R2b-SM-5J1MX
60-69 years, male
14.8
GTEX-XMD1-0011-R2B-SM-4AT5N
60-69 years, male
14.8
GTEX-13X6I-0011-R2b-SM-5PNWQ
60-69 years, male
14.7
GTEX-YFC4-0011-R2a-SM-4V6DZ
40-49 years, female
14.7
GTEX-1MA7X-0011-R2b-SM-EZ6MT
60-69 years, male
14.6
GTEX-17EVP-0011-R2a-SM-7LG4W
40-49 years, male
14.5
GTEX-1A3MX-0011-R2b-SM-7EWFL
60-69 years, male
14.5
GTEX-OHPN-0011-R2A-SM-2I5FB
60-69 years, female
14.4
GTEX-1GTWX-0011-R2b-SM-ADEH5
60-69 years, male
14.4
GTEX-1J8Q2-0011-R2b-SM-EAZ2X
60-69 years, male
14.4
GTEX-1B996-0011-R2a-SM-7IGON
60-69 years, male
14.3
GTEX-OXRO-0011-R2A-SM-3NB1W
60-69 years, female
14.3
GTEX-YJ89-0011-R2b-SM-4RGLT
60-69 years, male
14.3
GTEX-RU72-0011-R2A-SM-2TF6O
50-59 years, female
14.0
GTEX-1LSNL-0011-R2a-SM-EZ6MK
50-59 years, male
14.0
GTEX-13G51-0011-R2b-SM-5LZXS
60-69 years, male
13.9
GTEX-147GR-0011-R2b-SM-5S2RQ
60-69 years, male
13.8
GTEX-PWO3-0011-R2A-SM-2S1OX
60-69 years, female
13.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ
50-59 years, male
13.8
GTEX-13OW6-0011-R2a-SM-5L3HG
50-59 years, male
13.7
GTEX-T2IS-0011-R2A-SM-32QPF
20-29 years, female
13.7
GTEX-WHSE-0011-R2A-SM-3P5ZL
20-29 years, male
13.7
GTEX-ZV68-0011-R2a-SM-4YCDK
50-59 years, female
13.5
GTEX-1F6IF-0011-R2b-SM-9QEHB
60-69 years, male
13.5
GTEX-13FXS-0011-R2b-SM-5K7XX
50-59 years, male
13.4
GTEX-13O3O-0011-R2b-SM-5P9H1
60-69 years, female
13.4
GTEX-XLM4-0011-R2B-SM-4AT5Z
60-69 years, male
13.4
GTEX-12WSF-0011-R2a-SM-5DUVU
70-79 years, male
13.3
GTEX-1C6VR-0011-R2a-SM-7RHGZ
60-69 years, male
13.3
GTEX-1F6I4-0011-R2a-SM-CL536
60-69 years, male
13.3
GTEX-1GZ2Q-0011-R2b-SM-9OSWO
40-49 years, male
13.3
GTEX-11UD1-0011-R2b-SM-5BC6O
40-49 years, female
13.2
GTEX-13N2G-0011-R2a-SM-5MR4Q
60-69 years, male
13.2
GTEX-13QJC-0011-R2b-SM-5PNUN
60-69 years, female
13.2
GTEX-13PDP-0011-R2b-SM-5O9DH
60-69 years, male
13.1
GTEX-NPJ8-0011-R2a-SM-2TC6M
40-49 years, male
13.1
GTEX-1H3VE-0011-R2a-SM-CE6SA
40-49 years, male
13.0
GTEX-1J1OQ-0011-R2b-SM-ARU88
40-49 years, female
13.0
GTEX-1H1DG-0011-R2a-SM-ADEIQ
70-79 years, male
12.9
GTEX-1HSMO-0011-R2a-SM-CL553
60-69 years, male
12.9
GTEX-QMR6-0011-R2A-SM-32PKV
50-59 years, male
12.8
GTEX-13OW8-0011-R2a-SM-5L3G2
60-69 years, male
12.6
GTEX-14BIN-0011-R2a-SM-5S2RJ
50-59 years, female
12.6
GTEX-QDT8-0011-R2A-SM-32PKQ
30-39 years, female
12.6
GTEX-1I1CD-0011-R2a-SM-CM2T3
60-69 years, female
12.5
GTEX-15DYW-0011-R2b-SM-7KUKY
60-69 years, female
12.4
GTEX-1I1GV-0011-R2a-SM-ARZLF
60-69 years, male
12.4
GTEX-1IL2U-0011-R2a-SM-ARU6V
60-69 years, male
12.4
GTEX-13SLW-0011-R2b-SM-5O9C6
70-79 years, male
12.3
GTEX-P44G-0011-R2A-SM-2XCD2
30-39 years, male
12.3
GTEX-11WQC-0011-R2a-SM-DO927
60-69 years, male
12.3
GTEX-1GMR8-0011-R2a-SM-CE6RD
50-59 years, female
12.3
GTEX-13X6K-0011-R2b-SM-5P9K3
60-69 years, female
12.2
GTEX-131XH-0011-R2b-SM-5DUVY
50-59 years, male
12.1
GTEX-R55E-0011-R2A-SM-EYYV9
20-29 years, male
12.1
GTEX-14PJO-0011-R2a-SM-5ZZVF
60-69 years, male
12.0
GTEX-1RLM8-0011-R2a-SM-EZ6N4
50-59 years, male
12.0
GTEX-1EU9M-0011-R2b-SM-9QEH7
60-69 years, male
11.9
GTEX-1IKOH-0011-R2a-SM-CMKHO
60-69 years, female
11.9
GTEX-1JMQK-0011-R2a-SM-EYYXQ
60-69 years, male
11.6
GTEX-15EO6-0011-R2a-SM-6M46R
50-59 years, male
11.5
GTEX-1I1GS-0011-R2b-SM-CMKHG
60-69 years, male
11.5
GTEX-11GSO-0011-R2a-SM-57WDF
60-69 years, male
11.4
GTEX-15DCD-0011-R2b-SM-6LPIE
70-79 years, female
11.4
GTEX-18464-0011-R2a-SM-731AL
50-59 years, male
11.3
GTEX-13OVJ-0011-R2b-SM-5L3GP
50-59 years, female
11.1
GTEX-15RJE-0011-R2b-SM-79OMP
40-49 years, male
10.6
GTEX-16Z82-0011-R2b-SM-79OK9
60-69 years, male
10.6
GTEX-12WSD-0011-R2a-SM-5LZWB
60-69 years, female
10.5
GTEX-14ASI-0011-R2b-SM-5YY9H
60-69 years, male
10.5
GTEX-ZDXO-0011-R2b-SM-4WKFG
60-69 years, male
10.2
GTEX-11GS4-0011-R2a-SM-DO942
60-69 years, male
10.1
GTEX-12WSA-0011-R2a-SM-57WDK
60-69 years, male
9.7
Show allShow less
MIDBRAIN - FANTOM5 CAGEi
RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.
Max subtype Scaled Tags Per Millioni
Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.
24.8
Mouse sample
Sample description
nTPM
Midbrain nTPM: 24.8
Samples: 4
Max nTPM: 25.7
Min nTPM: 23.8
Sample A
Male
24.5
Sample B
Male
25.7
Sample C
Female
23.8
Sample D
Female
25.1
MIDBRAIN - Allen Mouse ISHi
In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.
Max subtype Expression energyi
Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.