MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.7 nTPM
HPA Brain:35.9 nTPM
GTEx:88.7 nTPM
FANTOM5:112.4 Scaled Tags Per Million
Pig:75.4 nTPM
Mouse:51.7 nTPM
Allen mouse:3.9 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 35.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 28.7
2019 Male, age 18, unknown 35.9
1827 Male, age 72, unknown 34.5
2411 Female, age 72, unknown 33.6
1870 Female, age 42, unknown 32.3
2828 Female, age 72, unknown 28.7
1833 Male, age 53, unknown 25.8
2666 Male, age 74, left hemisphere 25.8
1830 Male, age 51, unknown 24.8
2219 Male, age 76, both hemispheres 23.1
2586 Male, age 75, left hemisphere 22.5
Dorsal raphe nucleus
nTPM: 31.7
2298 Female, age 72, unknown 43.6
1828 Male, age 53, unknown 32.3
2750 Male, age 76, both hemispheres 28.6
2016 Female, age 72, unknown 27.2
2047 Male, age 72, unknown 26.9
Inferior colliculus
nTPM: 35.0
2097 Female, age 72, unknown 42.2
1890 Male, age 53, unknown 36.4
1848 Female, age 42, unknown 34.4
2849 Male, age 72, unknown 27.1
Median raphe nucleus
nTPM: 25.8
2220 Male, age 76, midline 25.8
Periaquaductal grey, anterior
nTPM: 32.6
1947 Male, age 18, unknown 35.6
2502 Female, age 75, unknown 32.2
1795 Male, age 51, unknown 29.8
Periaquaductal grey, dorsal
nTPM: 29.6
1840 Male, age 53, unknown 33.3
2464 Female, age 72, unknown 29.0
1831 Male, age 72, unknown 28.3
2850 Male, age 76, both hemispheres 27.9
Periaquaductal grey, lateral
nTPM: 29.6
2053 Male, age 18, unknown 30.7
2140 Male, age 76, both hemispheres 29.2
2272 Male, age 74, both hemispheres 28.9
Pretectal area
nTPM: 35.9
1944 Female, age 72, unknown 42.7
1817 Female, age 42, unknown 41.6
2007 Male, age 72, unknown 41.6
1816 Male, age 51, unknown 39.7
2273 Male, age 74, both hemispheres 39.4
2316 Male, age 76, right hemisphere 35.2
2667 Female, age 75, unknown 35.0
1815 Male, age 53, unknown 34.7
2224 Female, age 72, unknown 33.0
2825 Male, age 18, unknown 28.6
2407 Male, age 75, both hemispheres 23.9
Red nucleus
nTPM: 32.5
1821 Female, age 72, unknown 42.3
2503 Female, age 72, unknown 38.9
2785 Male, age 18, unknown 34.6
1865 Male, age 51, unknown 34.4
2769 Male, age 72, unknown 34.1
1904 Male, age 53, unknown 33.2
2725 Female, age 75, unknown 32.6
1954 Female, age 42, unknown 31.5
2227 Male, age 72, unknown 31.5
2588 Male, age 74, left hemisphere 28.4
2823 Male, age 76, right hemisphere 27.0
2584 Male, age 75, left hemisphere 20.9
Substantia nigra
nTPM: 34.1
1889 Female, age 72, unknown 41.3
2241 Male, age 72, unknown 39.8
1851 Male, age 51, unknown 39.1
1916 Female, age 42, unknown 37.4
1941 Male, age 53, unknown 37.2
2590 Female, age 75, unknown 33.3
2665 Male, age 74, both hemispheres 32.6
2699 Male, age 18, unknown 30.0
2409 Female, age 72, unknown 27.1
2583 Male, age 75, right hemisphere 23.4
Superior colliculus
nTPM: 32.4
2587 Male, age 74, left hemisphere 44.6
2087 Female, age 72, unknown 41.5
1895 Male, age 76, right hemisphere 38.3
1913 Female, age 42, unknown 32.6
2668 Female, age 75, unknown 32.2
1839 Male, age 51, unknown 29.4
1796 Male, age 53, unknown 29.2
2261 Male, age 18, unknown 28.3
1995 Male, age 72, unknown 27.7
2664 Male, age 75, both hemispheres 20.9
Ventral tegmental area
nTPM: 31.4
1915 Female, age 42, unknown 35.9
2410 Female, age 72, unknown 33.6
2223 Female, age 72, unknown 33.2
1942 Male, age 51, unknown 30.0
2218 Male, age 76, both hemispheres 28.6
2021 Male, age 53, unknown 27.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 88.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.7
Samples: 183

Max nTPM: 175.4
Min nTPM: 53.9
Std nTPM: 19.6
Median nTPM: 87.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 175.4
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 148.5
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 141.3
GTEX-1MCQQ-0011-R2a-SM-F649V 60-69 years, male 139.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 138.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 135.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 134.0
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 132.0
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 130.5
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 121.1
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 120.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 112.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 112.4
FF:10158-103A5 76 years, female 112.4

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 75.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 57.7
Samples: 4

Max nTPM: 85.1
Min nTPM: 42.4
Sample A Female 85.1
Sample B Female 53.0
Sample C Male 50.4
Sample D Male 42.4
Midbrain
nTPM: 64.6
Samples: 4

Max nTPM: 69.0
Min nTPM: 57.7
Sample A Female 69.0
Sample B Female 63.1
Sample C Male 68.4
Sample D Male 57.7
Periaqueductal gray
nTPM: 54.6
Samples: 3

Max nTPM: 57.4
Min nTPM: 49.6
Sample B Female 57.4
Sample C Male 56.9
Sample D Male 49.6
Superior colliculi
nTPM: 75.5
Samples: 4

Max nTPM: 87.5
Min nTPM: 60.3
Sample A Female 71.7
Sample B Female 82.3
Sample C Male 87.5
Sample D Male 60.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 51.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 51.7
Samples: 4

Max nTPM: 55.0
Min nTPM: 48.2
Sample A Male 55.0
Sample B Male 53.6
Sample C Female 49.8
Sample D Female 48.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.9
393253 Antisense, RP_040809_01_A03, Mouse strain C57BL/6J (56 days, male) 3.9

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