MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:38.8 nTPM
HPA Brain:111.2 nTPM
GTEx:38.8 nTPM
FANTOM5:91.3 Scaled Tags Per Million
Pig:19.1 nTPM
Mouse:23.4 nTPM
Allen mouse:0.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 111.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 89.7
2828 Female, age 72, unknown 114.1
2586 Male, age 75, left hemisphere 110.1
1870 Female, age 42, unknown 101.1
1830 Male, age 51, unknown 90.4
1833 Male, age 53, unknown 90.0
2411 Female, age 72, unknown 88.4
2019 Male, age 18, unknown 85.1
1827 Male, age 72, unknown 81.6
2666 Male, age 74, left hemisphere 72.1
2219 Male, age 76, both hemispheres 64.2
Dorsal raphe nucleus
nTPM: 84.0
2016 Female, age 72, unknown 100.0
2750 Male, age 76, both hemispheres 90.3
1828 Male, age 53, unknown 88.6
2047 Male, age 72, unknown 75.7
2298 Female, age 72, unknown 65.4
Inferior colliculus
nTPM: 82.9
1848 Female, age 42, unknown 94.1
1890 Male, age 53, unknown 88.4
2849 Male, age 72, unknown 75.7
2097 Female, age 72, unknown 73.4
Median raphe nucleus
nTPM: 85.0
2220 Male, age 76, midline 85.0
Periaquaductal grey, anterior
nTPM: 82.1
2502 Female, age 75, unknown 91.2
1947 Male, age 18, unknown 82.2
1795 Male, age 51, unknown 73.0
Periaquaductal grey, dorsal
nTPM: 82.8
2464 Female, age 72, unknown 83.3
1831 Male, age 72, unknown 82.8
2850 Male, age 76, both hemispheres 82.7
1840 Male, age 53, unknown 82.6
Periaquaductal grey, lateral
nTPM: 78.5
2053 Male, age 18, unknown 90.5
2140 Male, age 76, both hemispheres 86.7
2272 Male, age 74, both hemispheres 58.2
Pretectal area
nTPM: 88.6
2316 Male, age 76, right hemisphere 117.6
2667 Female, age 75, unknown 102.3
2224 Female, age 72, unknown 95.5
1815 Male, age 53, unknown 94.4
1944 Female, age 72, unknown 91.8
2273 Male, age 74, both hemispheres 85.8
1817 Female, age 42, unknown 83.8
2825 Male, age 18, unknown 80.0
1816 Male, age 51, unknown 79.0
2407 Male, age 75, both hemispheres 73.3
2007 Male, age 72, unknown 71.5
Red nucleus
nTPM: 111.2
2503 Female, age 72, unknown 135.9
1821 Female, age 72, unknown 133.1
1954 Female, age 42, unknown 124.7
2769 Male, age 72, unknown 121.4
1904 Male, age 53, unknown 121.3
2227 Male, age 72, unknown 119.9
1865 Male, age 51, unknown 118.5
2823 Male, age 76, right hemisphere 118.1
2785 Male, age 18, unknown 93.8
2588 Male, age 74, left hemisphere 91.4
2725 Female, age 75, unknown 86.0
2584 Male, age 75, left hemisphere 70.3
Substantia nigra
nTPM: 96.0
2699 Male, age 18, unknown 127.9
2409 Female, age 72, unknown 112.1
1851 Male, age 51, unknown 109.8
1916 Female, age 42, unknown 96.8
2241 Male, age 72, unknown 95.2
1889 Female, age 72, unknown 93.1
2583 Male, age 75, right hemisphere 89.7
2590 Female, age 75, unknown 89.3
2665 Male, age 74, both hemispheres 83.5
1941 Male, age 53, unknown 62.5
Superior colliculus
nTPM: 96.9
1913 Female, age 42, unknown 126.0
1995 Male, age 72, unknown 123.7
1796 Male, age 53, unknown 103.1
2668 Female, age 75, unknown 99.0
1839 Male, age 51, unknown 98.8
2664 Male, age 75, both hemispheres 87.2
2087 Female, age 72, unknown 85.9
2587 Male, age 74, left hemisphere 83.5
1895 Male, age 76, right hemisphere 82.6
2261 Male, age 18, unknown 79.5
Ventral tegmental area
nTPM: 93.0
2410 Female, age 72, unknown 103.7
1915 Female, age 42, unknown 103.5
2021 Male, age 53, unknown 93.9
2218 Male, age 76, both hemispheres 88.0
1942 Male, age 51, unknown 86.7
2223 Female, age 72, unknown 82.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 38.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.8
Samples: 183

Max nTPM: 120.2
Min nTPM: 8.5
Std nTPM: 18.1
Median nTPM: 35.2
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 120.2
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 102.5
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 101.1
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 93.3
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 83.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 83.3
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 81.9
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 75.3
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 73.8
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 73.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 71.9
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 91.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.3
FF:10158-103A5 76 years, female 91.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 19.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 18.5
Samples: 4

Max nTPM: 22.7
Min nTPM: 13.5
Sample A Female 16.4
Sample B Female 21.5
Sample C Male 13.5
Sample D Male 22.7
Midbrain
nTPM: 19.1
Samples: 4

Max nTPM: 35.8
Min nTPM: 10.1
Sample A Female 35.8
Sample B Female 16.6
Sample C Male 14.0
Sample D Male 10.1
Periaqueductal gray
nTPM: 12.4
Samples: 3

Max nTPM: 13.5
Min nTPM: 10.4
Sample B Female 13.5
Sample C Male 10.4
Sample D Male 13.2
Superior colliculi
nTPM: 14.2
Samples: 4

Max nTPM: 15.7
Min nTPM: 11.4
Sample A Female 14.7
Sample B Female 11.4
Sample C Male 14.9
Sample D Male 15.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 24.3
Min nTPM: 22.8
Sample A Male 24.3
Sample B Male 23.0
Sample C Female 22.8
Sample D Female 23.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.6
68797727 Antisense, RP_050215_01_A06, Mouse strain C57BL/6J (56 days, male) 1.0
74583162 Antisense, RP_051214_02_F10, Mouse strain C57BL/6J (56 days, male) 0.3

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