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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:408.5 nTPM
HPA Brain:110.1 nTPM
GTEx:408.5 nTPM
FANTOM5:119.4 Scaled Tags Per Million
Pig:92.3 nTPM
Mouse:314.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

110.1
Sample id Sample description nTPM
Amygdala
nTPM: 110.1
2814 Male, age 76, right hemisphere 155.0
1987 Female, age 91, left hemisphere 112.4
2514 Male, age 75, right hemisphere 106.2
2695 Female, age 67, right hemisphere 95.8
2517 Female, age 94, left hemisphere 81.1
Basal amygdala
nTPM: 79.8
1955 Male, age 76, both hemispheres 96.0
2609 Male, age 75, right hemisphere 89.0
2110 Male, age 80, left hemisphere 88.6
2685 Female, age 94, left hemisphere 81.5
2243 Female, age 91, right hemisphere 73.9
2827 Female, age 67, right hemisphere 50.1
Central amygdala
nTPM: 93.4
1905 Male, age 76, both hemispheres 145.2
2826 Female, age 94, left hemisphere 96.2
2515 Male, age 75, right hemisphere 86.2
2239 Male, age 80, left hemisphere 73.8
2701 Female, age 91, right hemisphere 65.6
Corticomedial amygdala
nTPM: 85.1
2829 Male, age 80, left hemisphere 109.7
2428 Male, age 75, right hemisphere 98.7
2429 Female, age 94, left hemisphere 96.9
2242 Female, age 91, right hemisphere 77.4
2240 Male, age 76, both hemispheres 69.6
2535 Female, age 67, right hemisphere 58.3
Lateral amygdala
nTPM: 84.6
1883 Male, age 76, both hemispheres 140.1
2516 Male, age 75, right hemisphere 101.5
2534 Female, age 94, left hemisphere 88.3
2255 Female, age 91, right hemisphere 64.0
2256 Male, age 80, left hemisphere 57.7
2830 Female, age 67, right hemisphere 55.9

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

408.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 408.5
Samples: 181

Max nTPM: 1637.5
Min nTPM: 188.6
Std nTPM: 168.5
Median nTPM: 365.2
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1637.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1090.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1077.0
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1008.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 846.3
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 812.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 785.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 762.4
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 670.1
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 649.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 623.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 616.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 609.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 586.8
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 578.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 574.9
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 557.7
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 556.7
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 554.4
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 552.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 544.2
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 542.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 539.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 519.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 515.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 511.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 510.6
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 506.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 505.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 504.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 495.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 494.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 491.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 485.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 484.4
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 481.3
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 476.2
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 475.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 473.2
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 473.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 472.3
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 466.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 464.5
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 463.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 459.8
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 455.6
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 450.7
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 450.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 449.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 444.6
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 441.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 440.2
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 434.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 433.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 428.8
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 428.8
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 428.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 423.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 422.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 421.4
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 420.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 417.6
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 416.6
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 416.1
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 413.1
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 412.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 412.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 408.8
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 407.0
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 405.2
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 403.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 403.2
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 401.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 391.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 390.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 389.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 389.0
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 387.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 384.2
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 381.7
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 380.9
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 379.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 378.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 378.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 376.3
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 375.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 371.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 370.6
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 369.1
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 369.0
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 365.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 364.8
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 364.6
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 364.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 364.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 362.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 360.2
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 360.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 359.6
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 359.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 358.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 358.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 357.5
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 357.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 356.6
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 356.3
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 356.3
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 354.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 354.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 353.2
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 351.6
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 349.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 346.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 346.3
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 346.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 345.4
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 344.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 344.7
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 340.4
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 334.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 334.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 332.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 331.0
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 330.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 328.6
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 327.5
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 327.3
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 326.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 326.2
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 326.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 324.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 320.8
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 319.8
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 319.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 318.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 316.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 315.3
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 314.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 312.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 311.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 309.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 308.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 304.0
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 300.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 300.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 300.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 298.1
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 295.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 293.0
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 292.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 288.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 287.6
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 285.8
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 284.9
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 281.6
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 278.7
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 278.5
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 277.3
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 276.7
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 275.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 273.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 273.4
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 270.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 269.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 268.9
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 264.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 256.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 255.6
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 252.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 252.6
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 249.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 248.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 241.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 240.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 239.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 234.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 228.9
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 222.6
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 221.6
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 212.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 188.6
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

119.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 119.4
FF:10151-102I7 76 years, female 119.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

92.3
Pig sample Sample description nTPM
Amygdala
nTPM: 92.3
Samples: 4

Max nTPM: 128.2
Min nTPM: 70.9
Sample A Female 128.2
Sample B Female 92.8
Sample C Male 77.2
Sample D Male 70.9

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

314.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 314.5
Samples: 4

Max nTPM: 391.2
Min nTPM: 274.0
Sample A Male 274.0
Sample B Male 291.4
Sample C Female 391.2
Sample D Female 301.2

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