MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:389.8 nTPM
HPA Brain:125.9 nTPM
GTEx:389.8 nTPM
FANTOM5:139.1 Scaled Tags Per Million
Pig:169.5 nTPM
Mouse:124.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 125.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 96.5
2019 Male, age 18, unknown 151.2
2411 Female, age 72, unknown 120.1
1827 Male, age 72, unknown 111.6
1870 Female, age 42, unknown 104.3
2828 Female, age 72, unknown 87.4
2586 Male, age 75, left hemisphere 83.4
1833 Male, age 53, unknown 81.5
1830 Male, age 51, unknown 78.8
2666 Male, age 74, left hemisphere 75.5
2219 Male, age 76, both hemispheres 70.8
Dorsal raphe nucleus
nTPM: 118.1
2298 Female, age 72, unknown 151.0
1828 Male, age 53, unknown 120.4
2047 Male, age 72, unknown 119.1
2750 Male, age 76, both hemispheres 105.9
2016 Female, age 72, unknown 94.0
Inferior colliculus
nTPM: 101.7
2097 Female, age 72, unknown 142.2
1890 Male, age 53, unknown 115.3
1848 Female, age 42, unknown 88.3
2849 Male, age 72, unknown 60.8
Median raphe nucleus
nTPM: 98.0
2220 Male, age 76, midline 98.0
Periaquaductal grey, anterior
nTPM: 106.1
1947 Male, age 18, unknown 120.1
2502 Female, age 75, unknown 105.2
1795 Male, age 51, unknown 92.9
Periaquaductal grey, dorsal
nTPM: 79.4
1831 Male, age 72, unknown 90.5
1840 Male, age 53, unknown 83.9
2464 Female, age 72, unknown 75.1
2850 Male, age 76, both hemispheres 68.3
Periaquaductal grey, lateral
nTPM: 85.5
2053 Male, age 18, unknown 94.0
2272 Male, age 74, both hemispheres 93.8
2140 Male, age 76, both hemispheres 68.8
Pretectal area
nTPM: 118.8
2007 Male, age 72, unknown 176.3
1817 Female, age 42, unknown 156.2
1816 Male, age 51, unknown 148.4
1944 Female, age 72, unknown 139.1
1815 Male, age 53, unknown 121.0
2273 Male, age 74, both hemispheres 109.1
2224 Female, age 72, unknown 103.6
2667 Female, age 75, unknown 101.2
2407 Male, age 75, both hemispheres 92.2
2825 Male, age 18, unknown 81.0
2316 Male, age 76, right hemisphere 78.6
Red nucleus
nTPM: 125.9
1821 Female, age 72, unknown 192.2
2725 Female, age 75, unknown 150.6
2503 Female, age 72, unknown 131.5
2588 Male, age 74, left hemisphere 124.5
2785 Male, age 18, unknown 122.1
1865 Male, age 51, unknown 122.0
1904 Male, age 53, unknown 120.5
2823 Male, age 76, right hemisphere 119.3
2769 Male, age 72, unknown 116.0
1954 Female, age 42, unknown 111.4
2227 Male, age 72, unknown 105.7
2584 Male, age 75, left hemisphere 95.2
Substantia nigra
nTPM: 123.3
1916 Female, age 42, unknown 170.4
1851 Male, age 51, unknown 160.6
1889 Female, age 72, unknown 158.5
2241 Male, age 72, unknown 127.5
1941 Male, age 53, unknown 123.9
2665 Male, age 74, both hemispheres 108.7
2583 Male, age 75, right hemisphere 100.3
2590 Female, age 75, unknown 98.6
2409 Female, age 72, unknown 96.9
2699 Male, age 18, unknown 87.4
Superior colliculus
nTPM: 96.2
2587 Male, age 74, left hemisphere 111.8
2087 Female, age 72, unknown 109.4
2668 Female, age 75, unknown 108.8
1895 Male, age 76, right hemisphere 107.7
1796 Male, age 53, unknown 101.6
2261 Male, age 18, unknown 92.6
1913 Female, age 42, unknown 91.7
1839 Male, age 51, unknown 83.9
1995 Male, age 72, unknown 83.9
2664 Male, age 75, both hemispheres 71.0
Ventral tegmental area
nTPM: 111.9
2410 Female, age 72, unknown 132.5
1915 Female, age 42, unknown 123.8
2223 Female, age 72, unknown 120.5
2218 Male, age 76, both hemispheres 107.4
1942 Male, age 51, unknown 100.1
2021 Male, age 53, unknown 87.1

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 389.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 389.8
Samples: 183

Max nTPM: 889.6
Min nTPM: 178.0
Std nTPM: 107.9
Median nTPM: 373.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 889.6
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 705.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 685.1
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 683.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 672.6
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 643.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 641.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 602.5
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 596.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 589.6
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 582.1
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 139.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 139.1
FF:10158-103A5 76 years, female 139.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 169.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 123.0
Samples: 4

Max nTPM: 192.2
Min nTPM: 87.3
Sample A Female 192.2
Sample B Female 103.5
Sample C Male 108.9
Sample D Male 87.3
Midbrain
nTPM: 145.0
Samples: 4

Max nTPM: 162.3
Min nTPM: 127.2
Sample A Female 162.3
Sample B Female 127.2
Sample C Male 161.1
Sample D Male 129.4
Periaqueductal gray
nTPM: 102.8
Samples: 3

Max nTPM: 108.5
Min nTPM: 93.4
Sample B Female 106.6
Sample C Male 108.5
Sample D Male 93.4
Superior colliculi
nTPM: 169.5
Samples: 4

Max nTPM: 206.0
Min nTPM: 130.9
Sample A Female 206.0
Sample B Female 141.0
Sample C Male 199.9
Sample D Male 130.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 124.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 124.5
Samples: 4

Max nTPM: 167.7
Min nTPM: 94.2
Sample A Male 167.7
Sample B Male 104.9
Sample C Female 94.2
Sample D Female 131.1

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