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BETA
  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • IMMUNE

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  • EVOLUTION

  • RPS14
EVOLUTIONARY HIPPOCAMPAL FORMATION Show tissue menu
BRAIN72 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM9 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE14 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS
MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Low
Neuronal cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:762.1 nTPM
HPA Brain:316.3 nTPM
GTEx:762.1 nTPM
FANTOM5:22.7 Scaled Tags Per Million
Macaque:15.5 nTPM
Mouse:1223.6 nTPM
Pig:670.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

HIPPOCAMPUS - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018504
Glial cells Low
Neuronal cells High



HIPPOCAMPAL FORMATION - PROTEINTALKS DB MS
Median intensity 113606
Sample Intensity
Hippocampal formation_01
125148
Hippocampal formation_02
132355
Hippocampal formation_03
54609
Hippocampal formation_04
105535
Hippocampal formation_05
121676
Hippocampal formation_06
95239

HIPPOCAMPAL FORMATION - HPA Brain Stereo-seq

HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

316.3
Sample id Sample description nTPM
Dentate gyrus
nTPM: 303.4
2530 Female, age 94, left hemisphere 400.6
2010 Male, age 76, both hemispheres 335.2
2246 Female, age 85, both hemispheres 286.7
1927 Female, age 91, both hemispheres 272.9
2531 Female, age 67, both hemispheres 264.8
2528 Male, age 74, both hemispheres 260.5
Entorhinal gyrus
nTPM: 298.0
1787 Male, age 76, left hemisphere 330.8
2686 Male, age 75, right hemisphere 330.7
1938 Female, age 85, left hemisphere 300.1
2764 Male, age 80, right hemisphere 295.8
2117 Female, age 91, right hemisphere 289.6
2613 Female, age 94, left hemisphere 241.3
Hippocampus, CA1
nTPM: 293.3
1873 Female, age 85, both hemispheres 303.5
2749 Male, age 80, left hemisphere 302.9
2045 Male, age 76, both hemispheres 302.7
2082 Female, age 91, right hemisphere 289.2
2527 Male, age 74, both hemispheres 268.1
Hippocampus, CA2
nTPM: 304.3
2437 Female, age 94, left hemisphere 343.6
1963 Male, age 80, left hemisphere 333.0
1940 Female, age 85, left hemisphere 313.0
1892 Male, age 76, both hemispheres 291.9
2249 Male, age 74, both hemispheres 276.8
2113 Female, age 91, right hemisphere 267.4
Hippocampus, CA3
nTPM: 276.0
1867 Male, age 76, both hemispheres 333.2
2861 Female, age 67, both hemispheres 306.2
1891 Female, age 85, both hemispheres 285.6
2137 Male, age 80, left hemisphere 263.0
2436 Male, age 74, both hemispheres 261.5
2620 Female, age 94, left hemisphere 206.2
Parahippocampal cortex
nTPM: 285.7
2018 Male, age 76, both hemispheres 349.3
1850 Male, age 80, both hemispheres 321.1
1933 Female, age 85, both hemispheres 320.7
2250 Female, age 67, right hemisphere 312.8
1990 Female, age 91, right hemisphere 288.9
2245 Female, age 91, both hemispheres 273.5
2532 Female, age 72, left hemisphere 263.0
2692 Male, age 74, both hemispheres 253.0
2622 Female, age 67, right hemisphere 250.4
2693 Female, age 94, both hemispheres 224.0
Perirhinal gyrus
nTPM: 316.3
1841 Female, age 85, right hemisphere 356.4
1847 Female, age 91, left hemisphere 346.5
1794 Male, age 80, right hemisphere 337.7
2521 Female, age 94, right hemisphere 274.8
2848 Male, age 76, right hemisphere 266.2
Subiculum
nTPM: 297.9
2042 Male, age 76, both hemispheres 357.4
1977 Female, age 85, both hemispheres 310.8
1901 Male, age 80, both hemispheres 303.8
2438 Female, age 94, left hemisphere 282.4
2729 Female, age 91, right hemisphere 267.6
2619 Male, age 74, both hemispheres 265.6

HIPPOCAMPAL FORMATION - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

762.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 762.1
Samples: 255

Max nTPM: 2171.6
Min nTPM: 339.5
Std nTPM: 258.2
Median nTPM: 700.5
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 2171.6
GTEX-ZAJG-0011-R1a-SM-GQ1CV 50-59 years, female 1949.4
GTEX-OHPN-0011-R1A-SM-2I5GB 60-69 years, female 1643.4
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 1604.5
GTEX-1H4P4-0011-R1b-SM-CL54V 50-59 years, male 1593.9
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 1464.0
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 1356.3
GTEX-145LU-0011-R1a-SM-5Q5CE 50-59 years, male 1321.8
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 1310.2
GTEX-1NV8Z-0011-R1b-SM-F647K 60-69 years, male 1259.7
GTEX-17HII-0011-R1b-SM-7MGVW 50-59 years, male 1237.6
GTEX-1JJEA-0011-R1b-SM-F6495 60-69 years, male 1236.1
GTEX-11ZTS-0011-R1a-SM-5BC71 60-69 years, female 1228.8
GTEX-1C6VQ-0011-R1a-SM-7P8Q2 50-59 years, male 1214.2
GTEX-13FHP-0011-R1b-SM-5K7XL 50-59 years, male 1212.6
GTEX-13RTL-0011-R1a-SM-5PNZ8 40-49 years, male 1199.5
GTEX-1R9K4-0011-R1a-SM-F342F 60-69 years, male 1176.5
GTEX-1N5O9-0011-R1b-SM-F3K4W 60-69 years, male 1150.3
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 1121.4
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 1118.1
GTEX-18A6Q-0011-R1b-SM-731DI 60-69 years, male 1112.5
GTEX-1LG7Y-0011-R1a-SM-EYYWV 50-59 years, male 1112.1
GTEX-1399T-0011-R1b-SM-5DUWN 60-69 years, male 1104.7
GTEX-1HGF4-0011-R1a-SM-CJI3S 60-69 years, male 1095.3
GTEX-11DXW-0011-R1a-SM-DNZZD 40-49 years, male 1082.5
GTEX-1E1VI-0011-R1a-SM-ARZMM 50-59 years, male 1068.1
GTEX-1KANB-0011-R1a-SM-F3K5M 50-59 years, male 1064.3
GTEX-1RNSC-0011-R1b-SM-F342D 60-69 years, male 1062.4
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 1058.5
GTEX-13PLJ-0011-R1a-SM-GJ3QF 60-69 years, female 1055.0
GTEX-1MCQQ-0011-R1a-SM-F341G 60-69 years, male 1043.6
GTEX-1F75W-0011-R1a-SM-ARU81 60-69 years, male 1038.4
GTEX-ZF28-0011-R1a-SM-4WWD1 60-69 years, male 1023.9
GTEX-XMD1-0011-R1A-SM-4AT4C 60-69 years, male 1013.3
GTEX-1MJK2-0011-R1b-SM-F649H 50-59 years, male 1010.5
GTEX-16GPK-0011-R1b-SM-7EWDH 60-69 years, male 1009.5
GTEX-1EH9U-0011-R1b-SM-CJI2B 60-69 years, male 1008.9
GTEX-1CAV2-0011-R1a-SM-ARZML 40-49 years, female 1008.6
GTEX-12ZZZ-0011-R1a-SM-GIN8I 60-69 years, male 1006.9
GTEX-1H3VE-0011-R1a-SM-A9G1K 40-49 years, male 995.9
GTEX-1GN2E-0011-R1b-SM-CE6RJ 60-69 years, male 987.6
GTEX-1JN6P-0011-R1b-SM-G8LL3 60-69 years, male 979.7
GTEX-1LVAO-0011-R1a-SM-F649O 60-69 years, male 971.2
GTEX-1LVA9-0011-R1b-SM-F2TB5 50-59 years, male 960.3
GTEX-1PWST-0011-R1b-SM-F2I38 70-79 years, male 958.6
GTEX-1MA7X-0011-R1b-SM-F2TAB 60-69 years, male 956.7
GTEX-13O3Q-0011-R1b-SM-5KM3L 50-59 years, male 953.8
GTEX-1PPGY-0011-R1b-SM-G8LN3 60-69 years, male 952.4
GTEX-14DAQ-0011-R1a-SM-G8W85 60-69 years, female 951.1
GTEX-13OW5-0011-R1b-SM-5L3GE 60-69 years, male 947.4
GTEX-1LSNL-0011-R1a-SM-F3K51 50-59 years, male 945.5
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 945.5
GTEX-ZVZQ-0011-R1a-SM-57WBU 60-69 years, female 940.8
GTEX-183WM-0011-R1a-SM-718A8 70-79 years, female 934.5
GTEX-144GO-0011-R1a-SM-5PNWO 60-69 years, male 929.0
GTEX-1B933-0011-R1b-SM-9QEGW 50-59 years, female 917.3
GTEX-13JVG-0011-R1a-SM-5KM32 60-69 years, male 908.8
GTEX-14PN4-0011-R1b-SM-69LP8 50-59 years, male 906.9
GTEX-17F97-0011-R1b-SM-7IGM9 50-59 years, male 906.2
GTEX-1IOXB-0011-R1a-SM-D4P27 50-59 years, male 905.2
GTEX-1F52S-0011-R1a-SM-9OSX9 60-69 years, female 903.9
GTEX-117XS-0011-R1b-SM-GJ3PQ 60-69 years, male 887.3
GTEX-11TTK-0011-R1b-SM-GIN92 60-69 years, female 883.2
GTEX-17HG3-0011-R1a-SM-7LG6H 30-39 years, female 882.6
GTEX-1C64N-0011-R1b-SM-7P8Q7 50-59 years, male 882.3
GTEX-1H1DG-0011-R1b-SM-CKZP1 70-79 years, male 881.9
GTEX-11OF3-0011-R1b-SM-H65ZT 60-69 years, male 881.4
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 874.5
GTEX-17EVQ-0011-R1a-SM-7189S 70-79 years, male 873.6
GTEX-1C6VR-0011-R1a-SM-7MXUE 60-69 years, male 864.0
GTEX-15DYW-0011-R1a-SM-H6Q6Q 60-69 years, female 850.0
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 849.7
GTEX-1A8G6-0011-R1a-SM-7P8PC 60-69 years, male 845.9
GTEX-13FHO-0011-R1b-SM-5KLZG 60-69 years, male 844.9
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 838.2
GTEX-13SLX-0011-R1a-SM-H6Q8N 50-59 years, female 837.3
GTEX-13QJC-0011-R1b-SM-5S2UU 60-69 years, female 836.5
GTEX-132Q8-0011-R1a-SM-5EGLK 60-69 years, male 835.4
GTEX-1LB8K-0011-R1b-SM-EZ6MV 50-59 years, male 831.9
GTEX-15DCD-0011-R1b-SM-6LPIJ 70-79 years, female 830.1
GTEX-1313W-0011-R1b-SM-5EQ4A 50-59 years, female 829.2
GTEX-1I19N-0011-R1b-SM-GOR1A 70-79 years, male 828.7
GTEX-17HHY-0011-R1a-SM-7189V 50-59 years, male 816.4
GTEX-17MF6-0011-R1a-SM-72D6O 40-49 years, male 816.2
GTEX-11DXY-0011-R1b-SM-GI4VQ 60-69 years, male 811.1
GTEX-14PQA-0011-R1b-SM-6EU1G 50-59 years, female 810.3
GTEX-1OJC4-0011-R1a-SM-F2TAZ 50-59 years, female 810.3
GTEX-11DYG-0011-R1a-SM-GI4X6 60-69 years, male 808.4
GTEX-1RQEC-0011-R1b-SM-F2I2E 60-69 years, male 800.9
GTEX-13OW8-0011-R1a-SM-5L3HI 60-69 years, male 796.2
GTEX-1P4AB-0011-R1b-SM-F2TAV 50-59 years, male 795.7
GTEX-14PJM-0011-R1a-SM-CNPO3 50-59 years, female 790.1
GTEX-11UD1-0011-R1b-SM-5BC7D 40-49 years, female 789.2
GTEX-1H1CY-0011-R1a-SM-CKZOZ 60-69 years, female 783.4
GTEX-1GMR8-0011-R1b-SM-CJI2O 50-59 years, female 782.2
GTEX-ZZPT-0011-R1b-SM-GNINL 50-59 years, male 778.7
GTEX-13SLW-0011-R1a-SM-5S2W7 70-79 years, male 773.1
GTEX-15UF6-0011-R1a-SM-9QEGH 70-79 years, female 771.2
GTEX-13CF2-0011-R1a-SM-5LZY1 60-69 years, male 769.9
GTEX-1192X-0011-R1b-SM-GI4VU 50-59 years, male 769.2
GTEX-1RQED-0011-R1a-SM-F3K5W 60-69 years, male 769.2
GTEX-14JFF-0011-R1b-SM-G8W88 60-69 years, male 765.4
GTEX-ZYY3-0011-R1b-SM-GPI92 60-69 years, female 764.8
GTEX-1GZHY-0011-R1a-SM-CE6RR 50-59 years, female 761.3
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 756.8
GTEX-1I1GS-0011-R1a-SM-CJI43 60-69 years, male 756.5
GTEX-17JCI-0011-R1b-SM-718A3 60-69 years, female 756.1
GTEX-1LSVX-0011-R1a-SM-F3K5F 60-69 years, male 751.7
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 751.0
GTEX-13VXU-0011-R1a-SM-GINAT 50-59 years, male 749.3
GTEX-1JJ6O-0011-R1b-SM-F2I2M 60-69 years, male 744.5
GTEX-13112-0011-R1b-SM-5HL7K 50-59 years, male 740.3
GTEX-13FXS-0011-R1a-SM-5K7U6 50-59 years, male 736.3
GTEX-1BAJH-0011-R1a-SM-7P8SV 70-79 years, male 732.5
GTEX-12WSA-0011-R1b-SM-GI4VI 60-69 years, male 729.5
GTEX-1J1OQ-0011-R1a-SM-A9G1Z 40-49 years, female 725.5
GTEX-14E7W-0011-R1b-SM-5YYAT 70-79 years, male 724.6
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 723.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 722.3
GTEX-13NYS-0011-R1b-SM-5MR55 60-69 years, male 713.0
GTEX-YJ89-0011-R1a-SM-4RGLS 60-69 years, male 713.0
GTEX-13N2G-0011-R1b-SM-5MR3G 60-69 years, male 711.6
GTEX-1JMQJ-0011-R1b-SM-F2T9P 50-59 years, male 704.7
GTEX-1GF9W-0011-R1a-SM-9QEIQ 60-69 years, male 703.5
GTEX-1QMI2-0011-R1b-SM-F3K5Q 60-69 years, male 703.4
GTEX-13PVQ-0011-R1b-SM-GJ3RQ 50-59 years, male 703.3
GTEX-11EI6-0011-R1a-SM-DO93L 60-69 years, male 703.2
GTEX-16Z82-0011-R1b-SM-7EPHZ 60-69 years, male 700.5
GTEX-RU72-0011-R1A-SM-HAUZG 50-59 years, female 697.1
GTEX-13NZ8-0011-R1b-SM-5KM3V 60-69 years, female 696.4
GTEX-1H23P-0011-R1a-SM-ACKVC 60-69 years, male 695.2
GTEX-1KWVE-0011-R1a-SM-F649B 30-39 years, male 691.8
GTEX-ZAK1-0011-R1a-SM-GRR1R 50-59 years, female 691.2
GTEX-15CHQ-0011-R1a-SM-COH27 60-69 years, male 688.4
GTEX-1JMQK-0011-R1a-SM-F6484 60-69 years, male 687.7
GTEX-11ZVC-0011-R1b-SM-5BC6M 50-59 years, female 682.5
GTEX-14BMV-0011-R1b-SM-G9ERL 50-59 years, male 681.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 681.1
GTEX-13FTY-0011-R1a-SM-5LZXE 40-49 years, female 680.8
GTEX-12696-0011-R1a-SM-GHWPW 60-69 years, male 680.3
GTEX-14BIM-0011-R1a-SM-69LQI 60-69 years, female 679.7
GTEX-Y8DK-0011-R1A-SM-4RGLO 60-69 years, male 679.7
GTEX-139T8-0011-R1a-SM-5HL75 60-69 years, male 678.7
GTEX-11PRG-0011-R1b-SM-H7OHD 50-59 years, male 677.0
GTEX-ZAB4-0011-R1a-SM-4RGNO 40-49 years, male 676.5
GTEX-12ZZX-0011-R1a-SM-5EQ6B 40-49 years, female 674.3
GTEX-X4XX-0011-R1B-SM-3P622 60-69 years, male 673.2
GTEX-13FLW-0011-R1b-SM-5LZX2 50-59 years, male 671.4
GTEX-11H98-0011-R1a-SM-GIN8O 50-59 years, male 664.9
GTEX-1B996-0011-R1b-SM-7P8PO 60-69 years, male 663.4
GTEX-11GSO-0011-R1b-SM-57WD3 60-69 years, male 657.1
GTEX-13QIC-0011-R1a-SM-5O9CJ 60-69 years, female 655.8
GTEX-145LS-0011-R1b-SM-5PNUP 60-69 years, female 654.5
GTEX-11ONC-0011-R1a-SM-57WD4 60-69 years, male 652.9
GTEX-ZUA1-0011-R1a-SM-4YCE2 40-49 years, male 652.0
GTEX-1B8L1-0011-R1a-SM-7P8SS 60-69 years, male 651.1
GTEX-1E2YA-0011-R1b-SM-CJI29 50-59 years, male 649.5
GTEX-12WSM-0011-R1a-SM-5LZW6 60-69 years, male 647.9
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 645.7
GTEX-1EKGG-0011-R1b-SM-9QEI1 60-69 years, male 645.1
GTEX-1POEN-0011-R1b-SM-F3K3K 30-39 years, female 644.2
GTEX-1B8SF-0011-R1b-SM-7P8Q8 60-69 years, male 643.8
GTEX-WL46-0011-R1A-SM-3LK6M 50-59 years, male 642.7
GTEX-1F6I4-0011-R1a-SM-9OSWU 60-69 years, male 641.8
GTEX-13S7M-0011-R1b-SM-5PNZE 60-69 years, female 634.5
GTEX-13OW6-0011-R1a-SM-5L3HQ 50-59 years, male 632.4
GTEX-WVLH-0011-R1A-SM-4MVOK 50-59 years, male 632.3
GTEX-1IKK5-0011-R1b-SM-CE6SQ 60-69 years, male 631.5
GTEX-13OVL-0011-R1a-SM-5L3H5 50-59 years, male 629.2
GTEX-14ABY-0011-R1a-SM-6EU2W 50-59 years, male 629.1
GTEX-13PDP-0011-R1a-SM-5PNX5 60-69 years, male 628.9
GTEX-11GS4-0011-R1a-SM-DO129 60-69 years, male 627.6
GTEX-1A3MX-0011-R1b-SM-7P8PH 60-69 years, male 624.3
GTEX-1GN73-0011-R1a-SM-CKZNT 60-69 years, male 621.1
GTEX-15RJE-0011-R1b-SM-H6Q7N 40-49 years, male 619.6
GTEX-1JMOU-0011-R1b-SM-F341B 60-69 years, female 618.9
GTEX-131YS-0011-R1a-SM-5DUXC 60-69 years, female 618.1
GTEX-1KD4Q-0011-R1a-SM-F3K4Z 40-49 years, male 617.6
GTEX-1ICLZ-0011-R1b-SM-A9SM3 60-69 years, male 616.9
GTEX-RNOR-0011-R1A-SM-CNNP5 50-59 years, female 611.7
GTEX-1PIIG-0011-R1a-SM-F649P 30-39 years, male 611.0
GTEX-1JMPZ-0011-R1b-SM-F6497 30-39 years, male 610.0
GTEX-12ZZY-0011-R1a-SM-GIN9E 60-69 years, male 608.3
GTEX-12WSF-0011-R1a-SM-5DUVI 70-79 years, male 600.4
GTEX-1JMQL-0011-R1a-SM-F3K4U 50-59 years, female 600.3
GTEX-1R9PO-0011-R1b-SM-F2I2G 60-69 years, female 600.1
GTEX-1CB4G-0011-R1b-SM-9QEHT 60-69 years, male 595.0
GTEX-1F75A-0011-R1b-SM-CE6RA 50-59 years, male 593.6
GTEX-QVUS-0011-R1A-SM-3GAD2 60-69 years, female 592.9
GTEX-YFC4-0011-R1a-SM-4V6EH 40-49 years, female 592.6
GTEX-1H1ZS-0011-R1b-SM-A9G1E 70-79 years, male 590.7
GTEX-1GTWX-0011-R1a-SM-CE6RL 60-69 years, male 590.1
GTEX-1F48J-0011-R1a-SM-9QEIC 50-59 years, female 587.2
GTEX-UTHO-0011-R1A-SM-3GIJO 60-69 years, male 586.7
GTEX-13N1W-0011-R1b-SM-5MR4T 70-79 years, male 580.2
GTEX-1JMLX-0011-R1b-SM-G9ERV 50-59 years, male 578.9
GTEX-1F6IF-0011-R1b-SM-9WG78 60-69 years, male 578.8
GTEX-15EO6-0011-R1b-SM-H7OGP 50-59 years, male 577.8
GTEX-1I1GV-0011-R1a-SM-CL559 60-69 years, male 574.4
GTEX-16YQH-0011-R1a-SM-7LT8R 30-39 years, male 573.6
GTEX-1I1HK-0011-R1b-SM-CM2T7 60-69 years, male 573.6
GTEX-14JIY-0011-R1a-SM-68713 60-69 years, male 570.9
GTEX-1AX9I-0011-R1b-SM-7RHG2 60-69 years, male 570.5
GTEX-139TT-0011-R1a-SM-5LZVD 60-69 years, male 568.9
GTEX-16XZZ-0011-R1a-SM-7LTAH 60-69 years, male 568.4
GTEX-13RTJ-0011-R1a-SM-5O9D9 60-69 years, male 566.2
GTEX-ZDXO-0011-R1a-SM-4WKF4 60-69 years, male 561.5
GTEX-11NV4-0011-R1a-SM-GINAK 60-69 years, male 558.6
GTEX-15ER7-0011-R1b-SM-7KUE1 20-29 years, female 558.5
GTEX-14PJO-0011-R1b-SM-6AJAK 60-69 years, male 558.1
GTEX-X585-0011-R1B-SM-46MVE 50-59 years, male 556.8
GTEX-1GZ2Q-0011-R1a-SM-CJI2Y 40-49 years, male 553.9
GTEX-WZTO-0011-R1B-SM-3NMAR 40-49 years, male 551.2
GTEX-ZYFD-0011-R1b-SM-GRR1T 50-59 years, male 551.1
GTEX-12WSD-0011-R1b-SM-5LZVY 60-69 years, female 550.4
GTEX-1N2EE-0011-R1a-SM-F3K5K 60-69 years, male 548.6
GTEX-T6MN-0011-R1A-SM-32QOY 50-59 years, male 548.4
GTEX-13X6I-0011-R1b-SM-5PNZC 60-69 years, male 546.2
GTEX-13OW7-0011-R1b-SM-5L3HF 50-59 years, male 546.0
GTEX-N7MT-0011-R1a-SM-CNPO1 60-69 years, female 534.9
GTEX-1GN1U-0011-R1a-SM-CJI25 50-59 years, female 534.5
GTEX-1212Z-0011-R1b-SM-5BC72 60-69 years, male 534.1
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 529.7
GTEX-1I1GQ-0011-R1a-SM-CY8GG 50-59 years, male 528.1
GTEX-1H3NZ-0011-R1a-SM-CKZP5 60-69 years, male 527.2
GTEX-P44H-0011-R1A-SM-3NM8J 40-49 years, male 524.6
GTEX-14ASI-0011-R1b-SM-5S2TY 60-69 years, male 523.6
GTEX-15SHU-0011-R1b-SM-H6Q7U 40-49 years, female 514.4
GTEX-1H3O1-0011-R1b-SM-CL554 60-69 years, male 513.5
GTEX-NPJ7-0011-R1a-SM-3GACT 60-69 years, female 513.0
GTEX-17EVP-0011-R1a-SM-7DHLA 40-49 years, male 496.5
GTEX-145MH-0011-R1b-SM-5PNWY 50-59 years, male 489.3
GTEX-1N2EF-0011-R1a-SM-F2TAT 60-69 years, male 486.9
GTEX-1RDX4-0011-R1a-SM-F3K5H 50-59 years, female 486.6
GTEX-11WQC-0011-R1b-SM-DO932 60-69 years, male 484.5
GTEX-1HSKV-0011-R1b-SM-CMKH7 60-69 years, male 484.2
GTEX-WWYW-0011-R1A-SM-3TW8G 50-59 years, female 481.9
GTEX-S7SE-0011-R1A-SM-2XCDE 50-59 years, male 481.0
GTEX-14E6D-0011-R1b-SM-5YYAW 50-59 years, male 469.3
GTEX-12WSE-0011-R1b-SM-5GU4V 20-29 years, male 467.0
GTEX-Q2AG-0011-R1A-SM-2HMJI 40-49 years, female 465.7
GTEX-WHSE-0011-R1A-SM-3P5ZK 20-29 years, male 459.0
GTEX-1EMGI-0011-R1b-SM-9OSWZ 60-69 years, male 458.4
GTEX-14C5O-0011-R1b-SM-6AJBW 60-69 years, male 440.3
GTEX-1IY9M-0011-R1a-SM-EXURZ 60-69 years, male 430.9
GTEX-1LH75-0011-R1a-SM-F341Y 50-59 years, female 418.9
GTEX-1QP6S-0011-R1b-SM-F3K59 40-49 years, male 418.5
GTEX-13G51-0011-R1a-SM-5LZYR 60-69 years, male 416.3
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 410.4
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 400.9
GTEX-11GSP-0011-R1a-SM-9QEJ3 60-69 years, female 397.7
GTEX-1HBPI-0011-R1b-SM-A9SKF 50-59 years, male 396.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 370.8
GTEX-131XH-0011-R1a-SM-5DUWA 50-59 years, male 348.0
GTEX-1IDJH-0011-R1b-SM-ARU6U 70-79 years, male 339.5
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

22.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 22.7
FF:10153-102I9 76 years, female 28.8
FF:10169-103B7 60 years, female 16.6

HIPPOCAMPAL FORMATION - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

15.5
Macaque sample Sample description nTPM
Subiculum
nTPM: 15.5
Samples: 1

Max nTPM: 15.5
Min nTPM: 15.5
Sample A 15.5
Entorhinal cortex
nTPM: 11.4
Samples: 2

Max nTPM: 13.8
Min nTPM: 8.9
Sample A 8.9
Sample B 13.8
Hippocampal formation
nTPM: 13.0
Samples: 4

Max nTPM: 14.3
Min nTPM: 11.2
Sample A 14.3
Sample B 14.0
Sample C 12.5
Sample D 11.2

HIPPOCAMPAL FORMATION - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

670.7
Pig sample Sample description nTPM
Subiculum
nTPM: 552.4
Samples: 4

Max nTPM: 735.7
Min nTPM: 464.8
Sample A Female 735.7
Sample B Female 538.9
Sample C Male 464.8
Sample D Male 470.1
Dorsal hippocampus
nTPM: 670.7
Samples: 4

Max nTPM: 869.6
Min nTPM: 476.6
Sample A Female 869.6
Sample B Female 591.0
Sample C Male 745.8
Sample D Male 476.6
Entorhinal cortex
nTPM: 606.3
Samples: 4

Max nTPM: 723.5
Min nTPM: 492.8
Sample A Female 542.8
Sample B Female 665.9
Sample C Male 723.5
Sample D Male 492.8
Ventral hippocampus
nTPM: 609.9
Samples: 4

Max nTPM: 762.2
Min nTPM: 461.2
Sample A Female 560.3
Sample B Female 461.2
Sample C Male 762.2
Sample D Male 655.7

HIPPOCAMPAL FORMATION - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1223.6
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 883.6
Samples: 4

Max nTPM: 1063.8
Min nTPM: 674.2
Sample A 926.2
Sample B 870.1
Sample C 1063.8
Sample D 674.2
Hippocampal formation
nTPM: 1223.6
Samples: 4

Max nTPM: 1605.6
Min nTPM: 814.9
Sample A 1605.6
Sample B 1100.2
Sample C 1373.6
Sample D 814.9

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