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BETA
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  • RPS14
EVOLUTIONARY THALAMUS Show tissue menu
BRAIN72 EYE4 ENDOCRINE TISSUES5 RESPIRATORY SYSTEM6 PROXIMAL DIGESTIVE TRACT5 GASTROINTESTINAL TRACT11 LIVER & GALLBLADDER4 PANCREAS1 KIDNEY & URINARY BLADDER4 MALE REPRODUCTIVE SYSTEM11 BREAST & FEMALE REPRODUCTIVE SYSTEM9 MUSCLE & VASCULAR TISSUE12 CONNECTIVE & SOFT TISSUE14 SKIN4 BONE MARROW & LYMPHOID TISSUES7
Select an organ to show its tissues
AMYGDALA ANGULAR GYRUS ANNECTANT GYRUS ANTERIOR CINGULATE GYRUS BASAL GANGLIA CAUDATE NUCLEUS CAUDATE PUTAMEN CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS CINGULATE CORTEX CLAUSTRUM CORPUS CALLOSUM CUNEUS DORSAL HIPPOCAMPUS DORSAL ROOT GANGLION DORSAL SPINAL CORD ENTORHINAL CORTEX
FUSIFORM GYRUS GENICULATE NUCLEUS GLOBUS PALLIDUS GYRUS RECTUS HABENULA HIPPOCAMPAL FORMATION HYPOTHALAMUS HYPOTHALAMUS, ANTERIOR HYPOTHALAMUS, POSTERIOR INFERIOR FRONTAL GYRUS INFERIOR OCCIPITAL GYRUS INFERIOR TEMPORAL GYRUS INSULAR CORTEX LATERAL THALAMIC NUCLEI MEDULLA OBLONGATA MIDBRAIN MIDDLE FRONTAL GYRUS MIDDLE TEMPORAL GYRUS
MOTOR AND PREFRONTAL CORTEX MOTOR CORTEX OCCIPITAL CORTEX OCCIPITAL GYRUS OLFACTORY BULB ORBITAL GYRUS PERIAQUEDUCTAL GRAY PONS POSTCENTRAL GYRUS POSTERIOR CINGULATE CORTEX POSTERIOR PARAHIPPOCAMPAL GYRUS POSTERIOR THALAMUS PRECENTRAL GYRUS PREFRONTAL CORTEX PREOPTIC AREA PUTAMEN RETROSPLENIAL AND CINGULATE CORTEX RETROSPLENIAL CORTEX
SEPTUM SOMATOSENSORY CORTEX SPINAL CORD SUBICULUM SUBSTANTIA NIGRA SUPERIOR COLLICULI SUPERIOR FRONTAL GYRUS SUPERIOR PARIETAL LOBULE SUPERIOR TEMPORAL GYRUS SUPRAMARGINAL GYRUS TEMPORAL CORTEX THALAMUS VENTRAL FOREBRAIN VENTRAL HIPPOCAMPUS VENTRAL PALLIDUM VENTRAL SPINAL CORD VISUAL CORTEX WHITE MATTER
CORNEA HARDERIAN GLAND LENS RETINA
ADRENAL GLAND PARATHYROID GLAND PINEAL GLAND PITUITARY GLAND THYROID GLAND
BRONCHUS LARYNX LUNG NASOPHARYNX OLFACTORY EPITHELIUM TRACHEA
ESOPHAGUS LIP ORAL MUCOSA SALIVARY GLAND TONGUE
CECUM COLON DUODENUM ILEUM JEJUNUM RECTUM SMALL INTESTINE STOMACH STOMACH (LOWER) STOMACH (MIDDLE) STOMACH (UPPER)
GALLBLADDER LIVER LIVER (LOBE 1) LIVER (LOBE 4)
PANCREAS
KIDNEY KIDNEY (CORTEX) KIDNEY (MEDULLA) URINARY BLADDER
BULBOURETHRAL GLAND DUCTUS DEFERENS EPIDIDYMIS MALE PREPUTIAL GLAND PENIS PROSTATE PROSTATE (ANTERIOR) PROSTATE (VENTRAL) SEMINAL VESICLE TESTIS URETHRAL GLAND
BREAST CERVIX CLITORIS ENDOMETRIUM FALLOPIAN TUBE OVARY PLACENTA UTERUS VAGINA
AORTA BLOOD VESSEL DIAPHRAGM HEART ATRIUM HEART MUSCLE HEART VALVE HEART WALL PERIPHERAL VASCULATURE SKELETAL MUSCLE SMOOTH MUSCLE SMOOTH MUSCLE (INTESTINE) SMOOTH MUSCLE (UTERUS)
ABDOMINAL ADIPOSE TISSUE ADIPOSE TISSUE BROWN ADIPOSE TISSUE DURA MATER EAR CANAL EAR CARTILAGE JOINT CARTILAGE ORBITAL ADIPOSE TISSUE PERICARDIUM PERITONEUM PLEURA SUBCUTANEOUS ADIPOSE TISSUE SYNOVIAL TISSUE VAGUS NERVE
EYE LID SKIN SKIN (BACK) SKIN (GROIN)
APPENDIX BLOOD, PBMC BONE MARROW LYMPH NODE SPLEEN THYMUS TONSIL
HumanMacaqueMouseRatPig
Protein evolution
Brain
Evolutionary methods
THALAMUS - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

HPA Brain:460.3 nTPM
FANTOM5:27.0 Scaled Tags Per Million
Macaque:16.2 nTPM
Mouse:741.0 nTPM
Pig:728.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

THALAMUS - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

460.3
Sample id Sample description nTPM
Anterior thalamic nucleus, ventral
nTPM: 317.3
2396 Male, age 61, right hemisphere 399.7
2497 Male, age 66, unknown 284.3
2032 Female, age 42, unknown 267.8
Centromedial thalamic nucleus
nTPM: 267.4
2279 Female, age 85, left hemisphere 293.2
2401 Male, age 76, right hemisphere 241.7
Habenula
nTPM: 281.4
1957 Male, age 80, both hemispheres 315.8
2252 Male, age 62, unknown 285.5
2203 Male, age 61, left hemisphere 267.2
2276 Male, age 66, unknown 257.1
Lateral geniculate body
nTPM: 307.1
2857 Male, age 74, right hemisphere 396.6
2575 Female, age 94, right hemisphere 386.1
2841 Male, age 80, both hemispheres 315.8
2659 Male, age 66, unknown 298.9
2035 Female, age 72, unknown 294.6
1953 Male, age 62, unknown 281.1
2399 Male, age 61, left hemisphere 245.8
2106 Female, age 67, right hemisphere 238.2
Lateral thalamic nuclei
nTPM: 337.1
2573 Female, age 94, left hemisphere 381.2
2577 Male, age 74, both hemispheres 366.3
2661 Female, age 72, unknown 351.8
2765 Female, age 67, both hemispheres 332.2
1903 Male, age 76, left hemisphere 253.9
Medial dorsal thalamic nucleus
nTPM: 325.9
2572 Female, age 94, right hemisphere 580.8
1810 Male, age 48, unknown 331.2
2039 Female, age 72, unknown 328.4
1971 Male, age 61, right hemisphere 321.3
2402 Female, age 67, both hemispheres 318.8
2576 Male, age 74, both hemispheres 317.8
2492 Male, age 75, right hemisphere 317.6
1930 Female, age 42, unknown 314.4
1859 Male, age 76, both hemispheres 298.1
2026 Male, age 62, unknown 298.1
2498 Male, age 66, unknown 284.7
2660 Female, age 72, unknown 282.9
2283 Male, age 80, right hemisphere 242.3
Medial geniculate body
nTPM: 338.5
2571 Male, age 75, right hemisphere 458.5
2049 Male, age 76, both hemispheres 376.2
2650 Female, age 94, left hemisphere 373.0
2657 Male, age 74, right hemisphere 303.8
1811 Female, age 42, unknown 300.2
2207 Male, age 80, right hemisphere 282.7
2217 Female, age 72, unknown 275.2
Nucleus reuniens
nTPM: 326.4
2212 Female, age 67, left hemisphere 332.1
2210 Female, age 85, left hemisphere 325.3
2205 Male, age 80, left hemisphere 321.7
Nucleus rhomboideus
nTPM: 306.5
2213 Female, age 67, left hemisphere 340.0
2280 Female, age 85, left hemisphere 295.1
2206 Male, age 80, both hemispheres 284.3
Posterior thalamic nucleus
nTPM: 460.3
2649 Female, age 94, both hemispheres 843.4
2655 Male, age 74, right hemisphere 399.5
2495 Female, age 67, right hemisphere 317.8
2266 Male, age 76, right hemisphere 280.5
Pulvinar
nTPM: 289.3
2499 Male, age 66, unknown 347.8
2496 Female, age 67, right hemisphere 331.7
2724 Male, age 74, right hemisphere 313.2
1929 Male, age 48, unknown 295.9
2582 Female, age 72, unknown 289.4
1972 Male, age 62, unknown 280.3
2214 Male, age 76, right hemisphere 273.2
1932 Male, age 80, right hemisphere 270.0
2398 Male, age 61, left hemisphere 250.9
1899 Female, age 42, unknown 240.3
Subthalamic nucleus
nTPM: 315.1
2658 Male, age 74, both hemispheres 359.8
2124 Male, age 62, unknown 348.5
2056 Female, age 72, unknown 343.0
2275 Male, age 66, unknown 311.8
2282 Male, age 61, both hemispheres 307.2
2779 Female, age 42, unknown 299.3
2216 Male, age 48, unknown 288.5
2406 Female, age 72, unknown 262.4
Ventral posterolateral thalamic nucleus
nTPM: 283.9
2578 Male, age 74, both hemispheres 342.0
2197 Male, age 80, both hemispheres 299.2
2570 Male, age 75, right hemisphere 291.5
2397 Male, age 61, right hemisphere 283.3
2740 Male, age 76, right hemisphere 258.7
2581 Female, age 72, unknown 228.9
Ventral posteromedial thalamic nucleus
nTPM: 300.7
2653 Male, age 74, both hemispheres 357.2
2281 Male, age 75, right hemisphere 301.7
2202 Male, age 61, left hemisphere 293.9
2127 Male, age 76, right hemisphere 282.3
2758 Male, age 80, both hemispheres 268.3
Ventral thalamic nuclei
nTPM: 300.6
2291 Female, age 72, unknown 336.6
2580 Male, age 66, unknown 328.9
2652 Male, age 74, left hemisphere 307.3
1860 Male, age 76, both hemispheres 306.7
1912 Female, age 42, unknown 306.4
1845 Male, age 48, unknown 304.8
2285 Male, age 62, unknown 289.3
2204 Male, age 80, both hemispheres 278.2
2858 Female, age 72, unknown 247.4
Zona incerta
nTPM: 311.1
2822 Male, age 74, right hemisphere 365.4
2215 Male, age 66, unknown 342.4
2403 Male, age 62, unknown 319.9
2208 Male, age 80, right hemisphere 278.4
2663 Female, age 72, unknown 249.5

THALAMUS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

27.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Thalamus
Scaled Tags Per Million: 27.0
FF:10154-103A1 76 years, female 27.0

THALAMUS - Macaque RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

16.2
Macaque sample Sample description nTPM
Habenula
nTPM: 16.2
Samples: 1

Max nTPM: 16.2
Min nTPM: 16.2
Sample A 16.2
Lateral thalamic nuclei
nTPM: 10.1
Samples: 2

Max nTPM: 10.6
Min nTPM: 9.6
Sample A 10.6
Sample B 9.6
Thalamus
nTPM: 11.6
Samples: 2

Max nTPM: 11.9
Min nTPM: 11.3
Sample A 11.3
Sample B 11.9

THALAMUS - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

728.5
Pig sample Sample description nTPM
Thalamus
nTPM: 728.5
Samples: 3

Max nTPM: 808.9
Min nTPM: 671.1
Sample A Female 808.9
Sample C Male 705.5
Sample D Male 671.1

THALAMUS - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

741.0
Mouse sample Sample description nTPM
Thalamus
nTPM: 741.1
Samples: 4

Max nTPM: 871.2
Min nTPM: 630.4
Sample A 713.8
Sample B 748.8
Sample C 871.2
Sample D 630.4

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