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RPS14
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  • TISSUE

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  • RPS14
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:627.7 nTPM
FANTOM5:25.2 Scaled Tags Per Million
Pig:537.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018504
Glial cells Medium
Neuronal cells Medium


CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

627.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 627.7
Samples: 300

Max nTPM: 1832.6
Min nTPM: 299.0
Std nTPM: 201.8
Median nTPM: 602.1
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1832.6
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 1597.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 1417.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1307.3
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 1278.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 1274.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1250.9
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 1207.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1193.6
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 1093.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1076.4
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 1026.5
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 993.4
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 965.3
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 961.2
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 958.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 958.3
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 944.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 937.8
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 934.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 930.0
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 920.4
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 916.5
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 914.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 899.6
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 894.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 886.1
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 870.8
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 870.1
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 860.5
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 842.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 836.8
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 836.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 835.6
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 830.9
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 828.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 820.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 815.1
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 808.6
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 797.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 795.2
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 794.8
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 792.4
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 791.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 783.9
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 779.4
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 777.9
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 777.7
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 777.1
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 777.0
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 776.6
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 775.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 771.6
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 765.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 758.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 751.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 749.0
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 748.8
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 746.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 743.8
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 741.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 729.6
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 729.5
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 717.0
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 716.3
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 714.9
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 711.7
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 710.7
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 710.3
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 708.4
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 705.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 704.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 702.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 701.2
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 699.9
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 699.2
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 698.8
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 698.5
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 698.5
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 693.5
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 691.8
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 691.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 685.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 684.3
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 682.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 679.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 678.9
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 673.9
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 672.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 668.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 667.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 666.6
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 665.6
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 664.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 660.4
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 660.3
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 660.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 660.2
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 658.0
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 656.6
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 655.9
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 654.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 652.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 650.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 649.9
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 649.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 649.2
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 648.3
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 645.8
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 644.3
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 644.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 642.4
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 641.5
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 640.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 639.8
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 638.5
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 638.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 637.7
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 637.0
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 636.5
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 636.4
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 636.0
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 633.3
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 632.2
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 628.3
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 627.4
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 626.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 621.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 620.9
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 620.2
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 619.7
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 618.8
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 618.5
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 618.0
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 617.9
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 617.9
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 617.4
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 615.4
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 614.7
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 614.6
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 611.5
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 610.7
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 609.9
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 609.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 608.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 608.1
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 607.9
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 604.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 603.9
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 603.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 601.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 600.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 597.8
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 597.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 594.5
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 594.1
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 592.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 588.8
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 588.0
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 584.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 583.3
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 582.4
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 581.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 581.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 581.2
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 581.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 579.4
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 577.8
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 573.4
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 571.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 569.3
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 568.4
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 567.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 566.0
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 564.4
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 563.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 561.9
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 561.5
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 560.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 559.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 557.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 556.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 555.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 555.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 553.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 553.0
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 552.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 551.0
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 549.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 549.4
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 544.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 543.3
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 543.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 541.7
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 541.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 539.8
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 539.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 538.0
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 537.3
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 536.7
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 534.4
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 533.8
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 532.1
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 531.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 529.7
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 528.8
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 528.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 528.7
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 527.2
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 525.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 523.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 522.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 521.3
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 520.2
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 520.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 519.5
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 519.0
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 516.3
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 512.5
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 512.1
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 506.3
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 505.1
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 504.6
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 500.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 493.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 493.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 492.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 491.9
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 489.7
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 489.7
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 485.8
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 485.4
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 483.0
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 482.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 481.1
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 481.1
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 478.9
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 478.6
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 478.2
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 474.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 473.3
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 471.3
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 470.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 463.6
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 463.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 463.1
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 461.2
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 460.2
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 458.4
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 458.2
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 455.7
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 455.1
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 452.7
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 452.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 449.6
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 445.3
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 442.7
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 442.1
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 441.7
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 440.7
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 439.3
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 434.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 433.7
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 432.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 431.7
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 427.7
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 427.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 426.0
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 424.1
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 423.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 422.5
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 421.4
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 420.5
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 420.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 417.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 416.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 416.2
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 415.9
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 410.0
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 408.4
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 406.0
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 402.7
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 402.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 395.0
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 390.3
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 389.0
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 387.9
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 378.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 377.5
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 375.9
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 373.8
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 362.0
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 357.9
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 342.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 340.4
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 326.1
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 316.0
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 302.5
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 301.8
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 299.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

25.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 25.2
FF:10164-103B2 76 years, female 25.2

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

537.0
Pig sample Sample description nTPM
Caudate
nTPM: 537.0
Samples: 4

Max nTPM: 612.4
Min nTPM: 465.5
Sample A Female 481.2
Sample B Female 588.9
Sample C Male 612.4
Sample D Male 465.5

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