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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: High
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1377.0 nTPM
GTEx:1377.0 nTPM
FANTOM5:58.1 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA018504
Squamous epithelial cells High

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1377.0
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 1377.0
Samples: 170

Max nTPM: 3234.9
Min nTPM: 770.4
Std nTPM: 343.4
Median nTPM: 1362.5
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 3234.9
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 3069.2
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 2402.7
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 2057.6
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 1959.3
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 1958.8
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 1955.9
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 1942.3
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 1925.5
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 1924.6
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 1878.5
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 1822.8
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 1803.4
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 1791.7
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 1767.7
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 1760.0
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 1743.5
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 1742.7
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 1740.8
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 1739.8
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 1737.5
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 1727.0
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 1724.9
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 1720.4
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 1690.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 1673.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 1659.8
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 1637.9
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 1634.4
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 1625.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 1623.7
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 1617.3
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 1615.1
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 1603.2
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 1599.1
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 1580.6
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 1578.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 1570.7
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 1562.7
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 1553.3
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 1548.9
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 1548.6
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 1545.3
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 1526.0
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 1524.8
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 1517.7
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 1513.2
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 1510.4
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 1505.2
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 1501.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 1472.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 1471.2
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 1468.7
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 1466.4
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 1464.8
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 1459.9
GTEX-16NPV-2526-SM-6M483 50-59 years, female 1450.0
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 1448.1
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 1447.2
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 1441.0
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 1428.5
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 1424.1
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 1422.8
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 1422.0
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 1417.7
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 1416.9
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 1416.8
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 1416.1
GTEX-14PKU-1326-SM-6871B 40-49 years, female 1414.2
GTEX-QCQG-1226-SM-48U23 50-59 years, female 1414.1
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 1412.6
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 1405.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 1395.5
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 1394.4
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 1394.1
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 1392.4
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 1391.8
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 1384.5
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 1373.6
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 1370.7
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 1370.1
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 1369.4
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 1369.1
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 1368.6
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 1364.9
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 1360.0
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 1352.7
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 1346.8
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 1340.4
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 1332.8
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 1331.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 1328.7
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 1328.1
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 1325.4
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 1305.7
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 1303.0
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 1296.6
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 1295.1
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 1294.1
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 1293.4
GTEX-S341-1226-SM-4AD5S 40-49 years, female 1284.3
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 1282.9
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 1272.4
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 1272.3
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 1272.1
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 1272.0
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 1260.2
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 1250.8
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 1248.5
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 1248.3
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 1247.2
GTEX-11I78-2026-SM-5987C 50-59 years, female 1236.2
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 1217.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 1217.4
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 1215.5
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 1209.0
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 1203.9
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 1199.5
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 1193.6
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 1193.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 1188.2
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 1184.4
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 1183.0
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 1177.2
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 1174.5
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 1167.1
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 1161.3
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 1160.6
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 1160.0
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 1137.5
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 1136.9
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 1134.5
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 1116.1
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 1112.0
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 1111.8
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 1111.2
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 1105.3
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 1103.0
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 1086.9
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 1086.4
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 1083.8
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 1080.9
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 1069.9
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 1067.3
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 1064.5
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 1053.4
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 1041.2
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 1039.4
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 1039.1
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 1027.6
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 1022.4
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 1010.1
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 1008.6
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 994.9
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 977.4
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 977.0
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 967.5
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 939.9
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 931.3
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 915.2
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 903.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 890.8
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 888.1
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 872.9
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 872.5
GTEX-1C475-0526-SM-793AC 40-49 years, female 862.1
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 861.1
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 852.3
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 840.5
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 770.4
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

58.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 58.1
FF:10204-103F6 68 years, female 58.1

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