MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:54.4 nTPM
HPA Brain:71.3 nTPM
GTEx:54.4 nTPM
FANTOM5:67.3 Scaled Tags Per Million
Pig:54.3 nTPM
Mouse:47.4 nTPM
Allen mouse:0.2 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 71.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.2
2586 Male, age 75, left hemisphere 89.8
2019 Male, age 18, unknown 85.5
2666 Male, age 74, left hemisphere 71.6
2828 Female, age 72, unknown 71.3
1870 Female, age 42, unknown 58.3
2411 Female, age 72, unknown 54.1
1830 Male, age 51, unknown 50.8
1833 Male, age 53, unknown 50.7
1827 Male, age 72, unknown 48.8
2219 Male, age 76, both hemispheres 41.5
Dorsal raphe nucleus
nTPM: 61.5
2750 Male, age 76, both hemispheres 73.3
2047 Male, age 72, unknown 63.6
2016 Female, age 72, unknown 60.9
1828 Male, age 53, unknown 56.0
2298 Female, age 72, unknown 53.7
Inferior colliculus
nTPM: 54.0
1890 Male, age 53, unknown 60.8
2097 Female, age 72, unknown 53.2
2849 Male, age 72, unknown 51.4
1848 Female, age 42, unknown 50.7
Median raphe nucleus
nTPM: 65.3
2220 Male, age 76, midline 65.3
Periaquaductal grey, anterior
nTPM: 57.1
2502 Female, age 75, unknown 62.6
1795 Male, age 51, unknown 61.7
1947 Male, age 18, unknown 47.0
Periaquaductal grey, dorsal
nTPM: 52.7
1840 Male, age 53, unknown 61.5
2464 Female, age 72, unknown 54.7
2850 Male, age 76, both hemispheres 50.6
1831 Male, age 72, unknown 43.9
Periaquaductal grey, lateral
nTPM: 56.3
2272 Male, age 74, both hemispheres 59.9
2140 Male, age 76, both hemispheres 59.7
2053 Male, age 18, unknown 49.2
Pretectal area
nTPM: 68.9
2007 Male, age 72, unknown 105.6
1817 Female, age 42, unknown 89.0
1816 Male, age 51, unknown 85.2
1944 Female, age 72, unknown 81.4
1815 Male, age 53, unknown 71.6
2273 Male, age 74, both hemispheres 58.9
2316 Male, age 76, right hemisphere 55.5
2407 Male, age 75, both hemispheres 55.4
2667 Female, age 75, unknown 54.6
2224 Female, age 72, unknown 51.4
2825 Male, age 18, unknown 49.1
Red nucleus
nTPM: 71.3
2785 Male, age 18, unknown 95.6
2227 Male, age 72, unknown 82.8
2769 Male, age 72, unknown 81.2
2503 Female, age 72, unknown 78.2
2584 Male, age 75, left hemisphere 75.1
2588 Male, age 74, left hemisphere 70.1
1904 Male, age 53, unknown 67.3
1954 Female, age 42, unknown 64.1
1821 Female, age 72, unknown 62.5
2823 Male, age 76, right hemisphere 61.5
1865 Male, age 51, unknown 60.5
2725 Female, age 75, unknown 56.5
Substantia nigra
nTPM: 61.3
2583 Male, age 75, right hemisphere 82.2
2665 Male, age 74, both hemispheres 80.7
1889 Female, age 72, unknown 74.3
1851 Male, age 51, unknown 65.8
2590 Female, age 75, unknown 65.8
1916 Female, age 42, unknown 65.1
1941 Male, age 53, unknown 59.4
2699 Male, age 18, unknown 49.7
2241 Male, age 72, unknown 38.5
2409 Female, age 72, unknown 31.6
Superior colliculus
nTPM: 60.2
2668 Female, age 75, unknown 73.2
2664 Male, age 75, both hemispheres 72.7
2261 Male, age 18, unknown 68.0
1913 Female, age 42, unknown 65.6
2587 Male, age 74, left hemisphere 65.0
1995 Male, age 72, unknown 62.5
1796 Male, age 53, unknown 54.7
1839 Male, age 51, unknown 51.8
2087 Female, age 72, unknown 46.0
1895 Male, age 76, right hemisphere 42.9
Ventral tegmental area
nTPM: 59.0
1915 Female, age 42, unknown 65.9
2410 Female, age 72, unknown 61.8
2021 Male, age 53, unknown 60.6
1942 Male, age 51, unknown 60.0
2218 Male, age 76, both hemispheres 55.3
2223 Female, age 72, unknown 50.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 54.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 54.4
Samples: 183

Max nTPM: 115.7
Min nTPM: 20.8
Std nTPM: 15.1
Median nTPM: 53.2
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 115.7
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 99.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 93.4
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 91.6
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 87.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 87.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 87.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 81.3
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 80.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 79.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 79.0
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 67.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 67.3
FF:10158-103A5 76 years, female 67.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 54.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 54.4
Samples: 4

Max nTPM: 68.7
Min nTPM: 48.9
Sample A Female 68.7
Sample B Female 49.5
Sample C Male 48.9
Sample D Male 50.3
Midbrain
nTPM: 53.2
Samples: 4

Max nTPM: 79.6
Min nTPM: 39.4
Sample A Female 79.6
Sample B Female 53.4
Sample C Male 40.4
Sample D Male 39.4
Periaqueductal gray
nTPM: 43.5
Samples: 3

Max nTPM: 45.3
Min nTPM: 40.9
Sample B Female 44.4
Sample C Male 45.3
Sample D Male 40.9
Superior colliculi
nTPM: 53.0
Samples: 4

Max nTPM: 64.0
Min nTPM: 45.8
Sample A Female 64.0
Sample B Female 56.4
Sample C Male 45.8
Sample D Male 45.8

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 47.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 47.4
Samples: 4

Max nTPM: 51.7
Min nTPM: 38.2
Sample A Male 51.7
Sample B Male 49.6
Sample C Female 38.2
Sample D Female 50.0

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.2
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.2
70528396 Antisense, RP_050623_02_E04, Mouse strain C57BL/6J (56 days, male) 0.2

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