MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:132.5 nTPM
HPA Brain:158.2 nTPM
GTEx:132.5 nTPM
FANTOM5:322.1 Scaled Tags Per Million
Pig:196.4 nTPM
Mouse:256.8 nTPM
Allen mouse:21.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 158.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 115.5
2666 Male, age 74, left hemisphere 132.0
2586 Male, age 75, left hemisphere 126.2
1833 Male, age 53, unknown 119.1
2828 Female, age 72, unknown 118.8
1870 Female, age 42, unknown 117.3
2019 Male, age 18, unknown 116.4
2411 Female, age 72, unknown 115.9
1830 Male, age 51, unknown 114.2
1827 Male, age 72, unknown 110.3
2219 Male, age 76, both hemispheres 84.6
Dorsal raphe nucleus
nTPM: 138.0
2298 Female, age 72, unknown 171.0
2016 Female, age 72, unknown 141.0
2047 Male, age 72, unknown 139.6
1828 Male, age 53, unknown 130.4
2750 Male, age 76, both hemispheres 107.9
Inferior colliculus
nTPM: 130.1
1890 Male, age 53, unknown 139.4
2097 Female, age 72, unknown 138.1
1848 Female, age 42, unknown 129.4
2849 Male, age 72, unknown 113.7
Median raphe nucleus
nTPM: 116.0
2220 Male, age 76, midline 116.0
Periaquaductal grey, anterior
nTPM: 135.0
1947 Male, age 18, unknown 156.7
1795 Male, age 51, unknown 135.1
2502 Female, age 75, unknown 113.2
Periaquaductal grey, dorsal
nTPM: 123.8
1831 Male, age 72, unknown 133.7
1840 Male, age 53, unknown 128.3
2850 Male, age 76, both hemispheres 123.1
2464 Female, age 72, unknown 110.0
Periaquaductal grey, lateral
nTPM: 135.5
2272 Male, age 74, both hemispheres 161.2
2140 Male, age 76, both hemispheres 129.7
2053 Male, age 18, unknown 115.7
Pretectal area
nTPM: 125.9
2407 Male, age 75, both hemispheres 175.7
2273 Male, age 74, both hemispheres 156.6
2224 Female, age 72, unknown 141.5
2825 Male, age 18, unknown 119.9
1817 Female, age 42, unknown 119.8
1944 Female, age 72, unknown 116.7
1816 Male, age 51, unknown 113.9
2667 Female, age 75, unknown 113.7
2007 Male, age 72, unknown 112.4
2316 Male, age 76, right hemisphere 111.7
1815 Male, age 53, unknown 103.1
Red nucleus
nTPM: 117.6
2584 Male, age 75, left hemisphere 145.0
2725 Female, age 75, unknown 134.0
2227 Male, age 72, unknown 128.9
2785 Male, age 18, unknown 127.9
1954 Female, age 42, unknown 127.3
2769 Male, age 72, unknown 125.4
1904 Male, age 53, unknown 116.9
1865 Male, age 51, unknown 114.3
1821 Female, age 72, unknown 110.4
2503 Female, age 72, unknown 107.2
2823 Male, age 76, right hemisphere 93.9
2588 Male, age 74, left hemisphere 79.8
Substantia nigra
nTPM: 158.2
1916 Female, age 42, unknown 207.7
2590 Female, age 75, unknown 196.7
2583 Male, age 75, right hemisphere 177.7
1851 Male, age 51, unknown 168.0
1941 Male, age 53, unknown 153.9
2665 Male, age 74, both hemispheres 153.0
2699 Male, age 18, unknown 143.9
2241 Male, age 72, unknown 140.3
1889 Female, age 72, unknown 124.3
2409 Female, age 72, unknown 116.4
Superior colliculus
nTPM: 121.8
2664 Male, age 75, both hemispheres 155.9
2587 Male, age 74, left hemisphere 137.2
1995 Male, age 72, unknown 132.2
2087 Female, age 72, unknown 130.0
1796 Male, age 53, unknown 125.0
2261 Male, age 18, unknown 119.9
1839 Male, age 51, unknown 114.6
1913 Female, age 42, unknown 113.5
2668 Female, age 75, unknown 106.7
1895 Male, age 76, right hemisphere 83.1
Ventral tegmental area
nTPM: 150.2
1915 Female, age 42, unknown 171.2
1942 Male, age 51, unknown 161.0
2021 Male, age 53, unknown 157.7
2410 Female, age 72, unknown 139.0
2223 Female, age 72, unknown 138.0
2218 Male, age 76, both hemispheres 134.2

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 132.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 132.5
Samples: 183

Max nTPM: 383.6
Min nTPM: 41.1
Std nTPM: 50.6
Median nTPM: 123.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 383.6
GTEX-1P4AB-0011-R2a-SM-F649K 50-59 years, male 337.3
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 327.1
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 277.7
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 272.1
GTEX-X4EP-0011-R2B-SM-3P625 60-69 years, female 268.7
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 247.3
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 241.5
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 230.6
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 217.5
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 211.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 322.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 322.1
FF:10158-103A5 76 years, female 322.1

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 196.4
Pig sample Sample description nTPM
Substantia nigra
nTPM: 160.0
Samples: 4

Max nTPM: 178.5
Min nTPM: 133.1
Sample A Female 178.5
Sample B Female 166.1
Sample C Male 162.2
Sample D Male 133.1
Midbrain
nTPM: 157.5
Samples: 4

Max nTPM: 228.9
Min nTPM: 105.8
Sample A Female 168.2
Sample B Female 105.8
Sample C Male 228.9
Sample D Male 127.1
Periaqueductal gray
nTPM: 97.3
Samples: 3

Max nTPM: 109.4
Min nTPM: 86.7
Sample B Female 95.9
Sample C Male 109.4
Sample D Male 86.7
Superior colliculi
nTPM: 196.4
Samples: 4

Max nTPM: 221.0
Min nTPM: 160.7
Sample A Female 189.7
Sample B Female 221.0
Sample C Male 214.3
Sample D Male 160.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 256.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 256.8
Samples: 4

Max nTPM: 258.4
Min nTPM: 254.7
Sample A Male 254.7
Sample B Male 258.4
Sample C Female 257.9
Sample D Female 256.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 21.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 21.0
67779877 Antisense, RP_040922_01_E10, Mouse strain C57BL/6J (56 days, male) 26.0
71608217 Antisense, RP_050927_01_C01, Mouse strain C57BL/6J (56 days, male) 15.9

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