MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:67.2 nTPM
HPA Brain:95.9 nTPM
GTEx:67.2 nTPM
FANTOM5:260.3 Scaled Tags Per Million
Pig:128.7 nTPM
Mouse:85.3 nTPM
Allen mouse:18.1 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.6
1870 Female, age 42, unknown 95.2
2411 Female, age 72, unknown 88.6
1827 Male, age 72, unknown 83.8
1833 Male, age 53, unknown 78.1
1830 Male, age 51, unknown 75.5
2219 Male, age 76, both hemispheres 74.5
2586 Male, age 75, left hemisphere 73.2
2666 Male, age 74, left hemisphere 72.4
2828 Female, age 72, unknown 71.3
2019 Male, age 18, unknown 63.3
Dorsal raphe nucleus
nTPM: 81.5
2298 Female, age 72, unknown 86.2
2750 Male, age 76, both hemispheres 86.2
2016 Female, age 72, unknown 83.9
1828 Male, age 53, unknown 79.9
2047 Male, age 72, unknown 71.1
Inferior colliculus
nTPM: 78.9
2097 Female, age 72, unknown 85.3
1848 Female, age 42, unknown 78.8
2849 Male, age 72, unknown 78.2
1890 Male, age 53, unknown 73.5
Median raphe nucleus
nTPM: 80.5
2220 Male, age 76, midline 80.5
Periaquaductal grey, anterior
nTPM: 95.9
1947 Male, age 18, unknown 115.7
2502 Female, age 75, unknown 89.3
1795 Male, age 51, unknown 82.7
Periaquaductal grey, dorsal
nTPM: 80.1
1840 Male, age 53, unknown 84.4
1831 Male, age 72, unknown 82.8
2850 Male, age 76, both hemispheres 81.9
2464 Female, age 72, unknown 71.1
Periaquaductal grey, lateral
nTPM: 75.1
2053 Male, age 18, unknown 85.7
2140 Male, age 76, both hemispheres 75.3
2272 Male, age 74, both hemispheres 64.3
Pretectal area
nTPM: 78.0
2224 Female, age 72, unknown 91.2
2825 Male, age 18, unknown 89.6
2667 Female, age 75, unknown 82.3
2316 Male, age 76, right hemisphere 80.1
2273 Male, age 74, both hemispheres 79.8
1816 Male, age 51, unknown 75.7
1815 Male, age 53, unknown 75.4
2407 Male, age 75, both hemispheres 74.2
1817 Female, age 42, unknown 72.0
1944 Female, age 72, unknown 71.8
2007 Male, age 72, unknown 66.1
Red nucleus
nTPM: 82.0
1821 Female, age 72, unknown 104.3
2503 Female, age 72, unknown 91.3
1865 Male, age 51, unknown 87.2
1954 Female, age 42, unknown 87.0
1904 Male, age 53, unknown 84.3
2227 Male, age 72, unknown 84.0
2769 Male, age 72, unknown 82.9
2725 Female, age 75, unknown 81.4
2823 Male, age 76, right hemisphere 75.6
2584 Male, age 75, left hemisphere 73.3
2588 Male, age 74, left hemisphere 68.0
2785 Male, age 18, unknown 64.2
Substantia nigra
nTPM: 85.1
2241 Male, age 72, unknown 97.0
1916 Female, age 42, unknown 95.5
1851 Male, age 51, unknown 91.7
1941 Male, age 53, unknown 90.9
2409 Female, age 72, unknown 88.2
2699 Male, age 18, unknown 87.9
1889 Female, age 72, unknown 79.2
2665 Male, age 74, both hemispheres 77.9
2590 Female, age 75, unknown 73.5
2583 Male, age 75, right hemisphere 69.4
Superior colliculus
nTPM: 81.1
2668 Female, age 75, unknown 93.2
1913 Female, age 42, unknown 91.3
2587 Male, age 74, left hemisphere 89.6
1839 Male, age 51, unknown 84.2
1995 Male, age 72, unknown 80.5
1796 Male, age 53, unknown 79.8
1895 Male, age 76, right hemisphere 77.5
2664 Male, age 75, both hemispheres 75.3
2261 Male, age 18, unknown 74.1
2087 Female, age 72, unknown 65.8
Ventral tegmental area
nTPM: 85.9
2223 Female, age 72, unknown 87.7
1915 Female, age 42, unknown 87.4
2410 Female, age 72, unknown 87.1
2218 Male, age 76, both hemispheres 86.1
1942 Male, age 51, unknown 85.3
2021 Male, age 53, unknown 81.9

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 67.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 67.2
Samples: 183

Max nTPM: 128.8
Min nTPM: 34.5
Std nTPM: 16.2
Median nTPM: 64.6
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 128.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 128.1
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 118.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 117.9
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 112.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 111.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 106.0
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 105.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 104.8
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 101.9
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 99.7
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 260.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 260.3
FF:10158-103A5 76 years, female 260.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 128.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 97.0
Samples: 4

Max nTPM: 103.8
Min nTPM: 89.4
Sample A Female 103.8
Sample B Female 89.4
Sample C Male 99.7
Sample D Male 95.2
Midbrain
nTPM: 126.3
Samples: 4

Max nTPM: 139.3
Min nTPM: 108.9
Sample A Female 134.7
Sample B Female 108.9
Sample C Male 139.3
Sample D Male 122.2
Periaqueductal gray
nTPM: 94.7
Samples: 3

Max nTPM: 99.5
Min nTPM: 87.6
Sample B Female 99.5
Sample C Male 96.9
Sample D Male 87.6
Superior colliculi
nTPM: 128.7
Samples: 4

Max nTPM: 133.4
Min nTPM: 124.2
Sample A Female 124.2
Sample B Female 133.4
Sample C Male 131.8
Sample D Male 125.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 85.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.3
Samples: 4

Max nTPM: 87.1
Min nTPM: 83.5
Sample A Male 83.5
Sample B Male 87.1
Sample C Female 86.3
Sample D Female 84.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 18.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 18.1
69817898 Antisense, RP_050510_03_H12, Mouse strain C57BL/6J (56 days, male) 18.1

Contact

The Project

The Human Protein Atlas

KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo