MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:10.9 nTPM
HPA Brain:29.1 nTPM
GTEx:10.9 nTPM
FANTOM5:5.6 Scaled Tags Per Million
Pig:5.5 nTPM
Mouse:14.2 nTPM
Allen mouse:0.3 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 29.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 16.7
2828 Female, age 72, unknown 25.4
2586 Male, age 75, left hemisphere 19.6
1870 Female, age 42, unknown 18.6
1827 Male, age 72, unknown 17.6
1833 Male, age 53, unknown 15.4
1830 Male, age 51, unknown 15.3
2219 Male, age 76, both hemispheres 14.9
2411 Female, age 72, unknown 14.3
2666 Male, age 74, left hemisphere 13.6
2019 Male, age 18, unknown 12.6
Dorsal raphe nucleus
nTPM: 24.8
2016 Female, age 72, unknown 33.4
2298 Female, age 72, unknown 30.1
1828 Male, age 53, unknown 24.4
2047 Male, age 72, unknown 23.2
2750 Male, age 76, both hemispheres 12.9
Inferior colliculus
nTPM: 17.5
1848 Female, age 42, unknown 19.5
2849 Male, age 72, unknown 19.5
2097 Female, age 72, unknown 15.6
1890 Male, age 53, unknown 15.2
Median raphe nucleus
nTPM: 12.9
2220 Male, age 76, midline 12.9
Periaquaductal grey, anterior
nTPM: 22.2
1795 Male, age 51, unknown 27.4
2502 Female, age 75, unknown 22.2
1947 Male, age 18, unknown 17.0
Periaquaductal grey, dorsal
nTPM: 26.4
1840 Male, age 53, unknown 33.9
2850 Male, age 76, both hemispheres 26.8
1831 Male, age 72, unknown 22.5
2464 Female, age 72, unknown 22.5
Periaquaductal grey, lateral
nTPM: 29.1
2053 Male, age 18, unknown 31.8
2140 Male, age 76, both hemispheres 28.7
2272 Male, age 74, both hemispheres 26.7
Pretectal area
nTPM: 19.4
2273 Male, age 74, both hemispheres 31.7
2224 Female, age 72, unknown 25.0
2825 Male, age 18, unknown 22.6
2667 Female, age 75, unknown 20.0
2407 Male, age 75, both hemispheres 19.4
1944 Female, age 72, unknown 19.1
2316 Male, age 76, right hemisphere 18.4
1815 Male, age 53, unknown 16.6
1816 Male, age 51, unknown 16.6
2007 Male, age 72, unknown 12.6
1817 Female, age 42, unknown 11.9
Red nucleus
nTPM: 13.6
2769 Male, age 72, unknown 17.5
2823 Male, age 76, right hemisphere 15.9
2503 Female, age 72, unknown 15.0
2227 Male, age 72, unknown 14.9
1865 Male, age 51, unknown 13.9
2785 Male, age 18, unknown 13.2
1821 Female, age 72, unknown 12.9
1904 Male, age 53, unknown 12.8
2588 Male, age 74, left hemisphere 12.8
1954 Female, age 42, unknown 11.8
2584 Male, age 75, left hemisphere 11.2
2725 Female, age 75, unknown 11.0
Substantia nigra
nTPM: 17.9
2409 Female, age 72, unknown 25.9
2699 Male, age 18, unknown 22.8
1916 Female, age 42, unknown 20.5
2590 Female, age 75, unknown 19.8
1851 Male, age 51, unknown 18.9
2583 Male, age 75, right hemisphere 16.4
1941 Male, age 53, unknown 14.6
2241 Male, age 72, unknown 13.7
2665 Male, age 74, both hemispheres 13.3
1889 Female, age 72, unknown 13.2
Superior colliculus
nTPM: 19.7
2664 Male, age 75, both hemispheres 25.5
1995 Male, age 72, unknown 24.8
1913 Female, age 42, unknown 22.0
1796 Male, age 53, unknown 21.7
2087 Female, age 72, unknown 19.1
2261 Male, age 18, unknown 19.1
2668 Female, age 75, unknown 19.0
2587 Male, age 74, left hemisphere 16.2
1839 Male, age 51, unknown 15.6
1895 Male, age 76, right hemisphere 13.5
Ventral tegmental area
nTPM: 18.1
1915 Female, age 42, unknown 20.5
2021 Male, age 53, unknown 20.5
1942 Male, age 51, unknown 19.0
2410 Female, age 72, unknown 18.0
2218 Male, age 76, both hemispheres 15.4
2223 Female, age 72, unknown 15.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 10.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 10.9
Samples: 183

Max nTPM: 30.7
Min nTPM: 1.0
Std nTPM: 5.3
Median nTPM: 9.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 30.7
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 28.0
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 26.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 23.7
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 22.3
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 21.3
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 20.8
GTEX-1QMI2-0011-R2b-SM-F648R 60-69 years, male 20.8
GTEX-1R9PO-0011-R2a-SM-F2TBH 60-69 years, female 20.8
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 20.7
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 20.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 5.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 5.6
FF:10158-103A5 76 years, female 5.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 5.5
Pig sample Sample description nTPM
Substantia nigra
nTPM: 5.3
Samples: 4

Max nTPM: 6.4
Min nTPM: 4.3
Sample A Female 4.3
Sample B Female 5.6
Sample C Male 4.9
Sample D Male 6.4
Midbrain
nTPM: 4.6
Samples: 4

Max nTPM: 5.2
Min nTPM: 4.2
Sample A Female 4.4
Sample B Female 5.2
Sample C Male 4.2
Sample D Male 4.5
Periaqueductal gray
nTPM: 5.5
Samples: 3

Max nTPM: 5.9
Min nTPM: 5.2
Sample B Female 5.9
Sample C Male 5.5
Sample D Male 5.2
Superior colliculi
nTPM: 4.1
Samples: 4

Max nTPM: 4.4
Min nTPM: 3.7
Sample A Female 4.0
Sample B Female 3.7
Sample C Male 4.2
Sample D Male 4.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 14.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 14.2
Samples: 4

Max nTPM: 15.0
Min nTPM: 13.6
Sample A Male 15.0
Sample B Male 13.6
Sample C Female 13.8
Sample D Female 14.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.3
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.3
69104735 Antisense, RP_050316_02_B07, Mouse strain C57BL/6J (56 days, male) 0.3

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