MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:8.8 nTPM
HPA Brain:83.6 nTPM
GTEx:8.8 nTPM
FANTOM5:12.5 Scaled Tags Per Million
Pig:31.0 nTPM
Mouse:16.6 nTPM
Allen mouse:6.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 83.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 67.3
2828 Female, age 72, unknown 91.4
2019 Male, age 18, unknown 84.9
1827 Male, age 72, unknown 83.1
2586 Male, age 75, left hemisphere 81.4
2219 Male, age 76, both hemispheres 79.4
2666 Male, age 74, left hemisphere 61.7
2411 Female, age 72, unknown 49.8
1870 Female, age 42, unknown 48.2
1833 Male, age 53, unknown 47.3
1830 Male, age 51, unknown 45.5
Dorsal raphe nucleus
nTPM: 54.2
2298 Female, age 72, unknown 64.7
2047 Male, age 72, unknown 56.9
1828 Male, age 53, unknown 52.2
2016 Female, age 72, unknown 51.3
2750 Male, age 76, both hemispheres 46.2
Inferior colliculus
nTPM: 58.0
2097 Female, age 72, unknown 62.1
2849 Male, age 72, unknown 58.0
1848 Female, age 42, unknown 57.6
1890 Male, age 53, unknown 54.4
Median raphe nucleus
nTPM: 63.1
2220 Male, age 76, midline 63.1
Periaquaductal grey, anterior
nTPM: 81.7
1795 Male, age 51, unknown 98.9
2502 Female, age 75, unknown 77.3
1947 Male, age 18, unknown 68.9
Periaquaductal grey, dorsal
nTPM: 61.3
1840 Male, age 53, unknown 65.4
1831 Male, age 72, unknown 64.5
2464 Female, age 72, unknown 58.8
2850 Male, age 76, both hemispheres 56.7
Periaquaductal grey, lateral
nTPM: 67.1
2272 Male, age 74, both hemispheres 76.2
2140 Male, age 76, both hemispheres 68.6
2053 Male, age 18, unknown 56.3
Pretectal area
nTPM: 83.6
1816 Male, age 51, unknown 117.9
2007 Male, age 72, unknown 108.3
1944 Female, age 72, unknown 101.8
2273 Male, age 74, both hemispheres 94.5
1817 Female, age 42, unknown 92.1
1815 Male, age 53, unknown 90.2
2667 Female, age 75, unknown 71.8
2224 Female, age 72, unknown 66.0
2407 Male, age 75, both hemispheres 62.4
2316 Male, age 76, right hemisphere 58.9
2825 Male, age 18, unknown 56.2
Red nucleus
nTPM: 53.5
2785 Male, age 18, unknown 89.4
2725 Female, age 75, unknown 77.9
2588 Male, age 74, left hemisphere 60.3
2584 Male, age 75, left hemisphere 52.5
2503 Female, age 72, unknown 51.8
1954 Female, age 42, unknown 47.9
2769 Male, age 72, unknown 47.0
2227 Male, age 72, unknown 46.7
2823 Male, age 76, right hemisphere 46.3
1904 Male, age 53, unknown 42.2
1865 Male, age 51, unknown 40.1
1821 Female, age 72, unknown 39.7
Substantia nigra
nTPM: 64.2
1916 Female, age 42, unknown 86.5
1941 Male, age 53, unknown 83.1
1889 Female, age 72, unknown 77.3
2665 Male, age 74, both hemispheres 75.9
1851 Male, age 51, unknown 68.2
2590 Female, age 75, unknown 58.5
2583 Male, age 75, right hemisphere 50.0
2409 Female, age 72, unknown 47.8
2241 Male, age 72, unknown 47.5
2699 Male, age 18, unknown 47.3
Superior colliculus
nTPM: 70.3
2087 Female, age 72, unknown 93.4
2664 Male, age 75, both hemispheres 91.1
1796 Male, age 53, unknown 87.5
2261 Male, age 18, unknown 80.3
1895 Male, age 76, right hemisphere 61.8
2587 Male, age 74, left hemisphere 61.1
1995 Male, age 72, unknown 58.0
2668 Female, age 75, unknown 57.7
1839 Male, age 51, unknown 56.4
1913 Female, age 42, unknown 55.3
Ventral tegmental area
nTPM: 61.3
2218 Male, age 76, both hemispheres 70.9
1942 Male, age 51, unknown 69.9
1915 Female, age 42, unknown 63.5
2410 Female, age 72, unknown 61.0
2021 Male, age 53, unknown 55.9
2223 Female, age 72, unknown 46.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 8.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 8.8
Samples: 183

Max nTPM: 24.5
Min nTPM: 1.2
Std nTPM: 4.9
Median nTPM: 8.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 24.5
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 23.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 23.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 21.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 19.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 19.2
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 18.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 18.6
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 18.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 18.5
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 18.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 12.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 12.5
FF:10158-103A5 76 years, female 12.5

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 31.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 21.4
Samples: 4

Max nTPM: 29.6
Min nTPM: 13.8
Sample A Female 24.3
Sample B Female 17.9
Sample C Male 29.6
Sample D Male 13.8
Midbrain
nTPM: 31.0
Samples: 4

Max nTPM: 58.1
Min nTPM: 14.9
Sample A Female 15.6
Sample B Female 14.9
Sample C Male 58.1
Sample D Male 35.5
Periaqueductal gray
nTPM: 17.6
Samples: 3

Max nTPM: 20.9
Min nTPM: 15.7
Sample B Female 15.7
Sample C Male 20.9
Sample D Male 16.3
Superior colliculi
nTPM: 29.3
Samples: 4

Max nTPM: 40.6
Min nTPM: 19.9
Sample A Female 26.1
Sample B Female 19.9
Sample C Male 40.6
Sample D Male 30.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 16.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 16.6
Samples: 4

Max nTPM: 17.2
Min nTPM: 15.2
Sample A Male 16.6
Sample B Male 15.2
Sample C Female 17.2
Sample D Female 17.2

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 6.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.8
68861954 Antisense, RP_050301_01_C03, Mouse strain C57BL/6J (56 days, male) 6.8

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