MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:92.9 nTPM
HPA Brain:101.4 nTPM
GTEx:92.9 nTPM
FANTOM5:260.9 Scaled Tags Per Million
Pig:82.1 nTPM
Mouse:55.5 nTPM
Allen mouse:0.0 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 101.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 80.7
1870 Female, age 42, unknown 106.1
2019 Male, age 18, unknown 100.4
1830 Male, age 51, unknown 96.3
1833 Male, age 53, unknown 95.7
2411 Female, age 72, unknown 93.6
2219 Male, age 76, both hemispheres 76.9
2666 Male, age 74, left hemisphere 74.0
2828 Female, age 72, unknown 61.5
1827 Male, age 72, unknown 60.3
2586 Male, age 75, left hemisphere 42.6
Dorsal raphe nucleus
nTPM: 75.5
2750 Male, age 76, both hemispheres 104.7
1828 Male, age 53, unknown 74.6
2016 Female, age 72, unknown 72.6
2298 Female, age 72, unknown 63.6
2047 Male, age 72, unknown 62.1
Inferior colliculus
nTPM: 66.2
2097 Female, age 72, unknown 69.5
1848 Female, age 42, unknown 67.8
1890 Male, age 53, unknown 65.7
2849 Male, age 72, unknown 61.9
Median raphe nucleus
nTPM: 65.0
2220 Male, age 76, midline 65.0
Periaquaductal grey, anterior
nTPM: 64.2
1947 Male, age 18, unknown 82.4
2502 Female, age 75, unknown 63.9
1795 Male, age 51, unknown 46.2
Periaquaductal grey, dorsal
nTPM: 50.4
2464 Female, age 72, unknown 59.2
2850 Male, age 76, both hemispheres 57.8
1831 Male, age 72, unknown 44.9
1840 Male, age 53, unknown 39.6
Periaquaductal grey, lateral
nTPM: 50.8
2272 Male, age 74, both hemispheres 53.3
2053 Male, age 18, unknown 52.8
2140 Male, age 76, both hemispheres 46.5
Pretectal area
nTPM: 65.5
1817 Female, age 42, unknown 87.5
1815 Male, age 53, unknown 86.3
2007 Male, age 72, unknown 81.3
2316 Male, age 76, right hemisphere 73.7
2224 Female, age 72, unknown 60.7
2667 Female, age 75, unknown 60.1
1944 Female, age 72, unknown 55.9
2273 Male, age 74, both hemispheres 54.9
2825 Male, age 18, unknown 54.7
1816 Male, age 51, unknown 53.6
2407 Male, age 75, both hemispheres 51.9
Red nucleus
nTPM: 101.4
1821 Female, age 72, unknown 145.4
2823 Male, age 76, right hemisphere 120.3
1865 Male, age 51, unknown 120.0
1904 Male, age 53, unknown 119.3
1954 Female, age 42, unknown 111.4
2503 Female, age 72, unknown 105.0
2725 Female, age 75, unknown 95.5
2769 Male, age 72, unknown 95.3
2785 Male, age 18, unknown 93.7
2227 Male, age 72, unknown 92.7
2588 Male, age 74, left hemisphere 73.5
2584 Male, age 75, left hemisphere 45.0
Substantia nigra
nTPM: 80.6
2241 Male, age 72, unknown 107.6
2409 Female, age 72, unknown 93.5
1889 Female, age 72, unknown 89.9
1851 Male, age 51, unknown 85.2
2699 Male, age 18, unknown 80.1
1916 Female, age 42, unknown 78.6
1941 Male, age 53, unknown 76.9
2590 Female, age 75, unknown 72.4
2665 Male, age 74, both hemispheres 65.8
2583 Male, age 75, right hemisphere 55.5
Superior colliculus
nTPM: 70.4
1895 Male, age 76, right hemisphere 104.2
1913 Female, age 42, unknown 93.1
2668 Female, age 75, unknown 79.7
1995 Male, age 72, unknown 78.2
2587 Male, age 74, left hemisphere 75.7
1839 Male, age 51, unknown 73.7
1796 Male, age 53, unknown 52.3
2087 Female, age 72, unknown 52.1
2664 Male, age 75, both hemispheres 48.3
2261 Male, age 18, unknown 46.7
Ventral tegmental area
nTPM: 70.7
2410 Female, age 72, unknown 85.0
2223 Female, age 72, unknown 73.9
1915 Female, age 42, unknown 72.0
2218 Male, age 76, both hemispheres 70.5
1942 Male, age 51, unknown 64.2
2021 Male, age 53, unknown 58.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 92.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 92.9
Samples: 183

Max nTPM: 210.9
Min nTPM: 33.3
Std nTPM: 31.8
Median nTPM: 86.5
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 210.9
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 193.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 181.9
GTEX-1POEN-0011-R2b-SM-G8LLP 30-39 years, female 178.8
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 171.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 164.6
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 163.8
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 162.2
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 154.7
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 153.4
GTEX-1LSVX-0011-R2a-SM-G8OL9 60-69 years, male 150.6
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 260.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 260.9
FF:10158-103A5 76 years, female 260.9

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 82.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 82.1
Samples: 4

Max nTPM: 99.4
Min nTPM: 69.5
Sample A Female 99.4
Sample B Female 69.5
Sample C Male 83.6
Sample D Male 75.9
Midbrain
nTPM: 79.4
Samples: 4

Max nTPM: 95.7
Min nTPM: 68.3
Sample A Female 84.8
Sample B Female 95.7
Sample C Male 68.3
Sample D Male 68.8
Periaqueductal gray
nTPM: 68.5
Samples: 3

Max nTPM: 78.2
Min nTPM: 60.7
Sample B Female 78.2
Sample C Male 66.5
Sample D Male 60.7
Superior colliculi
nTPM: 79.5
Samples: 4

Max nTPM: 94.7
Min nTPM: 50.9
Sample A Female 90.7
Sample B Female 50.9
Sample C Male 94.7
Sample D Male 81.6

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 55.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 55.5
Samples: 4

Max nTPM: 57.2
Min nTPM: 54.3
Sample A Male 55.6
Sample B Male 57.2
Sample C Female 54.8
Sample D Female 54.3

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.0
74357607 Antisense, RP_060119_03_A09, Mouse strain C57BL/6J (56 days, male) 0.0

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