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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:50.8 nTPM
HPA Brain:217.4 nTPM
GTEx:50.8 nTPM
FANTOM5:333.0 Scaled Tags Per Million
Pig:119.8 nTPM
Mouse:52.4 nTPM
Allen mouse:1.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

217.4
Sample id Sample description nTPM
Amygdala
nTPM: 217.4
2695 Female, age 67, right hemisphere 242.2
2514 Male, age 75, right hemisphere 232.3
2814 Male, age 76, right hemisphere 213.7
2517 Female, age 94, left hemisphere 207.6
1987 Female, age 91, left hemisphere 191.0
Basal amygdala
nTPM: 180.8
2609 Male, age 75, right hemisphere 266.7
2110 Male, age 80, left hemisphere 177.1
1955 Male, age 76, both hemispheres 174.5
2685 Female, age 94, left hemisphere 159.7
2827 Female, age 67, right hemisphere 153.8
2243 Female, age 91, right hemisphere 152.9
Central amygdala
nTPM: 196.1
2515 Male, age 75, right hemisphere 232.0
2826 Female, age 94, left hemisphere 208.6
1905 Male, age 76, both hemispheres 199.2
2239 Male, age 80, left hemisphere 174.1
2701 Female, age 91, right hemisphere 166.9
Corticomedial amygdala
nTPM: 158.0
2428 Male, age 75, right hemisphere 222.8
2829 Male, age 80, left hemisphere 162.8
2429 Female, age 94, left hemisphere 153.3
2535 Female, age 67, right hemisphere 149.5
2242 Female, age 91, right hemisphere 130.8
2240 Male, age 76, both hemispheres 129.1
Lateral amygdala
nTPM: 205.5
2516 Male, age 75, right hemisphere 281.9
2256 Male, age 80, left hemisphere 218.8
2255 Female, age 91, right hemisphere 188.6
1883 Male, age 76, both hemispheres 183.3
2830 Female, age 67, right hemisphere 182.0
2534 Female, age 94, left hemisphere 178.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

50.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 50.8
Samples: 181

Max nTPM: 109.8
Min nTPM: 10.8
Std nTPM: 18.5
Median nTPM: 49.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 109.8
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 105.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 98.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 93.8
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 90.2
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 90.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 87.2
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 86.8
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 86.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 86.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 83.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 83.2
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 82.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 81.4
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 81.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 80.7
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 80.6
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 78.9
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 75.1
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 74.3
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 74.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 74.0
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 73.7
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 73.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 73.3
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 72.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 72.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 70.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 69.7
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 68.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 67.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 66.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 66.5
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 66.0
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 66.0
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 65.4
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 64.6
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 64.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 63.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 63.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 63.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 63.2
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 63.0
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 62.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 62.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 62.4
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 62.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 61.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 61.2
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 60.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 60.7
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 60.5
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 58.2
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 58.1
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 58.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 57.9
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 57.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 57.3
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 57.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 56.7
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 55.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 55.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 55.3
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 55.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 54.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 54.4
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 54.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 53.9
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 53.6
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 53.6
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 53.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 53.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 53.1
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 52.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 52.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 52.3
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 52.0
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 51.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 51.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 51.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 51.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 50.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 50.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 49.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 49.8
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 49.8
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 49.3
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 49.3
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 49.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 49.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 49.1
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 49.0
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 48.8
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 48.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 48.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 48.5
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 47.8
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 47.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 47.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 47.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 46.4
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 46.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 46.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 45.9
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 45.8
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 45.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 45.2
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 45.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 45.1
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 44.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 44.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 44.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 43.8
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 43.6
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 43.6
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 43.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 43.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 43.4
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 43.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 43.4
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 43.0
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 43.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 41.2
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 41.1
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 40.8
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 40.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 40.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 40.2
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 39.4
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 39.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 39.0
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 38.4
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 37.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 37.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 37.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 37.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 37.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 35.8
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 35.7
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 35.7
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 35.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 35.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 35.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 34.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 34.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 34.5
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 34.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 33.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 33.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 33.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 32.7
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 32.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 32.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 32.3
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 31.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 31.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 30.6
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 30.6
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 29.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 28.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 28.6
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 28.6
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 27.3
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 27.0
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 25.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 25.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 25.5
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 25.2
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 24.7
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 24.6
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 24.4
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 24.2
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 23.9
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 23.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 23.2
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 22.6
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 21.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 20.8
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 20.7
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 18.8
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 10.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

333.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 333.0
FF:10151-102I7 76 years, female 333.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

119.8
Pig sample Sample description nTPM
Amygdala
nTPM: 119.9
Samples: 4

Max nTPM: 130.9
Min nTPM: 112.0
Sample A Female 112.0
Sample B Female 130.9
Sample C Male 122.7
Sample D Male 113.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

52.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 52.4
Samples: 4

Max nTPM: 67.0
Min nTPM: 45.1
Sample A Male 45.1
Sample B Male 45.5
Sample C Female 67.0
Sample D Female 52.1

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.5
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.5
35 Antisense, RP_Baylor_103286, Mouse strain C57BL/6J (56 days, male) 1.5
36 Antisense, RP_Baylor_103286, Mouse strain C57BL/6J (56 days, male) 0.0

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