MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:129.5 nTPM
HPA Brain:111.4 nTPM
GTEx:129.5 nTPM
FANTOM5:91.7 Scaled Tags Per Million
Pig:127.0 nTPM
Mouse:450.0 nTPM
Allen mouse:14.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 111.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 86.3
2019 Male, age 18, unknown 114.4
2411 Female, age 72, unknown 103.2
1827 Male, age 72, unknown 96.6
2666 Male, age 74, left hemisphere 87.0
1870 Female, age 42, unknown 82.1
2586 Male, age 75, left hemisphere 80.2
2219 Male, age 76, both hemispheres 79.4
1833 Male, age 53, unknown 75.6
2828 Female, age 72, unknown 74.7
1830 Male, age 51, unknown 70.0
Dorsal raphe nucleus
nTPM: 100.9
2298 Female, age 72, unknown 127.5
2047 Male, age 72, unknown 109.3
1828 Male, age 53, unknown 108.0
2750 Male, age 76, both hemispheres 86.1
2016 Female, age 72, unknown 73.8
Inferior colliculus
nTPM: 90.7
2097 Female, age 72, unknown 114.3
1890 Male, age 53, unknown 94.6
1848 Female, age 42, unknown 88.2
2849 Male, age 72, unknown 65.6
Median raphe nucleus
nTPM: 90.6
2220 Male, age 76, midline 90.6
Periaquaductal grey, anterior
nTPM: 89.8
1947 Male, age 18, unknown 99.4
2502 Female, age 75, unknown 88.0
1795 Male, age 51, unknown 82.0
Periaquaductal grey, dorsal
nTPM: 74.4
1840 Male, age 53, unknown 78.8
2464 Female, age 72, unknown 74.7
1831 Male, age 72, unknown 73.2
2850 Male, age 76, both hemispheres 71.1
Periaquaductal grey, lateral
nTPM: 70.4
2272 Male, age 74, both hemispheres 81.5
2053 Male, age 18, unknown 67.6
2140 Male, age 76, both hemispheres 62.2
Pretectal area
nTPM: 101.5
1817 Female, age 42, unknown 137.1
2007 Male, age 72, unknown 134.1
1816 Male, age 51, unknown 131.2
1944 Female, age 72, unknown 128.9
2667 Female, age 75, unknown 117.1
1815 Male, age 53, unknown 100.4
2224 Female, age 72, unknown 89.8
2273 Male, age 74, both hemispheres 89.3
2825 Male, age 18, unknown 67.1
2316 Male, age 76, right hemisphere 63.7
2407 Male, age 75, both hemispheres 58.3
Red nucleus
nTPM: 83.0
1821 Female, age 72, unknown 130.5
2785 Male, age 18, unknown 95.0
1954 Female, age 42, unknown 83.8
2823 Male, age 76, right hemisphere 83.0
2725 Female, age 75, unknown 82.9
1865 Male, age 51, unknown 81.0
2503 Female, age 72, unknown 79.1
2769 Male, age 72, unknown 76.8
1904 Male, age 53, unknown 75.3
2227 Male, age 72, unknown 74.1
2588 Male, age 74, left hemisphere 70.6
2584 Male, age 75, left hemisphere 63.8
Substantia nigra
nTPM: 111.4
1916 Female, age 42, unknown 155.1
2241 Male, age 72, unknown 136.9
1889 Female, age 72, unknown 132.6
1851 Male, age 51, unknown 127.3
1941 Male, age 53, unknown 127.2
2409 Female, age 72, unknown 111.2
2665 Male, age 74, both hemispheres 92.2
2699 Male, age 18, unknown 86.4
2590 Female, age 75, unknown 76.0
2583 Male, age 75, right hemisphere 69.4
Superior colliculus
nTPM: 82.5
2087 Female, age 72, unknown 107.5
2668 Female, age 75, unknown 96.0
1895 Male, age 76, right hemisphere 91.0
2587 Male, age 74, left hemisphere 90.0
2261 Male, age 18, unknown 88.1
1796 Male, age 53, unknown 82.4
1839 Male, age 51, unknown 75.2
2664 Male, age 75, both hemispheres 70.9
1913 Female, age 42, unknown 64.1
1995 Male, age 72, unknown 60.0
Ventral tegmental area
nTPM: 94.5
2410 Female, age 72, unknown 118.4
1915 Female, age 42, unknown 113.4
2218 Male, age 76, both hemispheres 100.7
1942 Male, age 51, unknown 84.5
2021 Male, age 53, unknown 75.1
2223 Female, age 72, unknown 74.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 129.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 129.5
Samples: 183

Max nTPM: 333.1
Min nTPM: 46.1
Std nTPM: 50.5
Median nTPM: 116.1
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 333.1
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 319.9
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 291.3
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 276.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 265.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 261.2
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 249.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 228.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 226.1
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 218.6
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 211.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 91.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 91.7
FF:10158-103A5 76 years, female 91.7

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 127.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 117.6
Samples: 4

Max nTPM: 170.7
Min nTPM: 64.4
Sample A Female 170.7
Sample B Female 97.1
Sample C Male 138.2
Sample D Male 64.4
Midbrain
nTPM: 113.7
Samples: 4

Max nTPM: 127.9
Min nTPM: 94.2
Sample A Female 94.2
Sample B Female 107.8
Sample C Male 124.9
Sample D Male 127.9
Periaqueductal gray
nTPM: 105.2
Samples: 3

Max nTPM: 123.8
Min nTPM: 95.1
Sample B Female 95.1
Sample C Male 123.8
Sample D Male 96.8
Superior colliculi
nTPM: 127.0
Samples: 4

Max nTPM: 152.0
Min nTPM: 102.9
Sample A Female 152.0
Sample B Female 102.9
Sample C Male 135.3
Sample D Male 117.9

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 450.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 450.0
Samples: 4

Max nTPM: 467.9
Min nTPM: 430.1
Sample A Male 430.1
Sample B Male 460.2
Sample C Female 467.9
Sample D Female 441.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.6
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.6
1207 Antisense, RP_Baylor_103242, Mouse strain C57BL/6J (56 days, male) 14.6
1208 Antisense, RP_Baylor_103242, Mouse strain C57BL/6J (56 days, male) 12.5

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