HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Medium
Neuronal cells: High
RNA expressioni
Consensus:109.1 nTPM
HPA Brain:77.2 nTPM
GTEx:109.1 nTPM
FANTOM5:102.7 Scaled Tags Per Million
Pig:55.0 nTPM
Mouse:206.3 nTPM
Allen mouse:14.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

HIPPOCAMPUS - Antibody stainingi
Antibody HPA006065
Glial cells Medium
Neuronal cells High



HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max subtype nTPMi 77.2
Sample id Sample description nTPM
Hippocampus
nTPM: 75.0
1898 Male, age 80, left hemisphere 89.4
2621 Female, age 67, right hemisphere 80.6
2529 Female, age 94, left hemisphere 77.7
1855 Male, age 76, left hemisphere 75.4
2148 Female, age 91, left hemisphere 68.3
1911 Female, age 85, right hemisphere 58.5
Dentate gyrus
nTPM: 71.5
2530 Female, age 94, left hemisphere 93.3
1927 Female, age 91, both hemispheres 80.5
2010 Male, age 76, both hemispheres 76.0
2531 Female, age 67, both hemispheres 61.7
2246 Female, age 85, both hemispheres 60.2
2528 Male, age 74, both hemispheres 57.2
Entorhinal gyrus
nTPM: 70.4
2764 Male, age 80, right hemisphere 79.9
1938 Female, age 85, left hemisphere 73.5
2686 Male, age 75, right hemisphere 72.3
1787 Male, age 76, left hemisphere 68.2
2613 Female, age 94, left hemisphere 67.9
2117 Female, age 91, right hemisphere 60.5
Hippocampus, CA1
nTPM: 73.3
2749 Male, age 80, left hemisphere 103.1
2045 Male, age 76, both hemispheres 73.4
1873 Female, age 85, both hemispheres 71.4
2527 Male, age 74, both hemispheres 64.8
2082 Female, age 91, right hemisphere 53.8
Hippocampus, CA2
nTPM: 75.6
1963 Male, age 80, left hemisphere 100.3
1892 Male, age 76, both hemispheres 91.5
2437 Female, age 94, left hemisphere 72.8
1940 Female, age 85, left hemisphere 72.6
2249 Male, age 74, both hemispheres 59.3
2113 Female, age 91, right hemisphere 57.1
Hippocampus, CA3
nTPM: 71.4
2137 Male, age 80, left hemisphere 84.0
1867 Male, age 76, both hemispheres 82.3
2861 Female, age 67, both hemispheres 68.6
2620 Female, age 94, left hemisphere 66.5
2436 Male, age 74, both hemispheres 65.0
1891 Female, age 85, both hemispheres 62.3
Parahippocampal cortex
nTPM: 67.6
1850 Male, age 80, both hemispheres 86.6
2245 Female, age 91, both hemispheres 74.9
1933 Female, age 85, both hemispheres 72.6
2532 Female, age 72, left hemisphere 69.5
2250 Female, age 67, right hemisphere 65.7
2018 Male, age 76, both hemispheres 65.2
1990 Female, age 91, right hemisphere 64.8
2692 Male, age 74, both hemispheres 60.8
2622 Female, age 67, right hemisphere 60.2
2693 Female, age 94, both hemispheres 55.2
Perirhinal gyrus
nTPM: 77.2
1847 Female, age 91, left hemisphere 86.3
1794 Male, age 80, right hemisphere 85.1
1841 Female, age 85, right hemisphere 76.2
2521 Female, age 94, right hemisphere 74.1
2848 Male, age 76, right hemisphere 64.2
Subiculum
nTPM: 66.2
1901 Male, age 80, both hemispheres 79.7
1977 Female, age 85, both hemispheres 68.7
2619 Male, age 74, both hemispheres 67.8
2438 Female, age 94, left hemisphere 65.6
2042 Male, age 76, both hemispheres 64.4
2729 Female, age 91, right hemisphere 51.1

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Max subtype nTPMi 109.1
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 109.1
Samples: 255

Max nTPM: 220.6
Min nTPM: 61.4
Std nTPM: 23.8
Median nTPM: 106.3
GTEX-14LLW-0011-R1a-SM-5ZZVD 70-79 years, female 220.6
GTEX-144GL-0011-R1a-SM-5PNZ5 50-59 years, male 195.3
GTEX-1LKK1-0011-R1b-SM-F2TAF 50-59 years, female 178.5
GTEX-11ZUS-0011-R1a-SM-GI4W7 30-39 years, male 174.2
GTEX-1O9I2-0011-R1a-SM-F2TAW 50-59 years, male 171.6
GTEX-13NYB-0011-R1b-SM-5KM4F 40-49 years, male 164.9
GTEX-12126-0011-R1a-SM-GJ3Q8 20-29 years, male 164.8
GTEX-1HT8W-0011-R1b-SM-CJI3V 30-39 years, male 159.2
GTEX-13O3O-0011-R1b-SM-5KM2K 60-69 years, female 157.9
GTEX-14E6C-0011-R1a-SM-G8W86 40-49 years, male 157.5
GTEX-N7MS-0011-R1a-SM-2HMJG 60-69 years, male 157.1
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 102.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 102.7
FF:10169-103B7 60 years, female 114.2
FF:10153-102I9 76 years, female 91.1

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Max subtype nTPMi 55.0
Pig sample Sample description nTPM
Subiculum
nTPM: 50.2
Samples: 4

Max nTPM: 68.0
Min nTPM: 41.9
Sample A Female 68.0
Sample B Female 47.6
Sample C Male 43.3
Sample D Male 41.9
Dorsal hippocampus
nTPM: 50.6
Samples: 4

Max nTPM: 61.5
Min nTPM: 39.7
Sample A Female 61.5
Sample B Female 46.8
Sample C Male 54.5
Sample D Male 39.7
Entorhinal cortex
nTPM: 55.0
Samples: 4

Max nTPM: 64.3
Min nTPM: 45.9
Sample A Female 53.2
Sample B Female 64.3
Sample C Male 56.6
Sample D Male 45.9
Ventral hippocampus
nTPM: 46.0
Samples: 4

Max nTPM: 53.3
Min nTPM: 36.5
Sample A Female 45.8
Sample B Female 36.5
Sample C Male 53.3
Sample D Male 48.4

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Max subtype nTPMi 206.3
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 187.6
Samples: 4

Max nTPM: 198.0
Min nTPM: 174.1
Sample A Male 174.1
Sample B Male 191.4
Sample C Female 198.0
Sample D Female 187.0
Hippocampal formation
nTPM: 206.3
Samples: 4

Max nTPM: 234.6
Min nTPM: 184.1
Sample A Male 234.6
Sample B Male 184.1
Sample C Female 204.4
Sample D Female 202.2

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max subtype Expression energyi 14.5
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 14.5
392935 Antisense, RP_040804_02_A06, Mouse strain C57BL/6J (56 days, male) 21.0
73512199 Antisense, RP_050712_04_C08, Mouse strain C57BL/6J (56 days, male) 7.9
70919149 Antisense, RP_050712_04_C08, Mouse strain C57BL/6J (56 days, male) 4.8

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