MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:116.4 nTPM
HPA Brain:95.4 nTPM
GTEx:116.4 nTPM
FANTOM5:78.0 Scaled Tags Per Million
Pig:66.0 nTPM
Mouse:167.2 nTPM
Allen mouse:7.5 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 95.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 76.5
2666 Male, age 74, left hemisphere 93.7
2586 Male, age 75, left hemisphere 92.3
2019 Male, age 18, unknown 84.8
1827 Male, age 72, unknown 83.5
2828 Female, age 72, unknown 75.9
2219 Male, age 76, both hemispheres 71.6
2411 Female, age 72, unknown 68.2
1870 Female, age 42, unknown 67.8
1833 Male, age 53, unknown 63.9
1830 Male, age 51, unknown 63.6
Dorsal raphe nucleus
nTPM: 68.9
2298 Female, age 72, unknown 73.2
2047 Male, age 72, unknown 70.6
1828 Male, age 53, unknown 70.5
2750 Male, age 76, both hemispheres 69.5
2016 Female, age 72, unknown 60.6
Inferior colliculus
nTPM: 63.6
1890 Male, age 53, unknown 69.1
2097 Female, age 72, unknown 67.0
2849 Male, age 72, unknown 60.0
1848 Female, age 42, unknown 58.2
Median raphe nucleus
nTPM: 72.0
2220 Male, age 76, midline 72.0
Periaquaductal grey, anterior
nTPM: 74.6
1947 Male, age 18, unknown 77.2
1795 Male, age 51, unknown 76.1
2502 Female, age 75, unknown 70.6
Periaquaductal grey, dorsal
nTPM: 58.0
1840 Male, age 53, unknown 63.9
2850 Male, age 76, both hemispheres 58.1
2464 Female, age 72, unknown 55.1
1831 Male, age 72, unknown 54.8
Periaquaductal grey, lateral
nTPM: 55.0
2140 Male, age 76, both hemispheres 55.8
2053 Male, age 18, unknown 55.3
2272 Male, age 74, both hemispheres 53.9
Pretectal area
nTPM: 77.0
2007 Male, age 72, unknown 106.0
1817 Female, age 42, unknown 101.2
1815 Male, age 53, unknown 91.9
1816 Male, age 51, unknown 91.5
1944 Female, age 72, unknown 89.8
2667 Female, age 75, unknown 71.3
2407 Male, age 75, both hemispheres 62.7
2825 Male, age 18, unknown 61.9
2224 Female, age 72, unknown 60.8
2273 Male, age 74, both hemispheres 57.6
2316 Male, age 76, right hemisphere 52.2
Red nucleus
nTPM: 73.1
2785 Male, age 18, unknown 86.2
1821 Female, age 72, unknown 82.7
2588 Male, age 74, left hemisphere 81.6
2725 Female, age 75, unknown 80.8
2503 Female, age 72, unknown 72.4
2584 Male, age 75, left hemisphere 71.2
1865 Male, age 51, unknown 70.3
1954 Female, age 42, unknown 67.7
1904 Male, age 53, unknown 67.5
2769 Male, age 72, unknown 66.4
2227 Male, age 72, unknown 66.3
2823 Male, age 76, right hemisphere 63.8
Substantia nigra
nTPM: 95.4
1916 Female, age 42, unknown 145.7
1851 Male, age 51, unknown 110.1
2665 Male, age 74, both hemispheres 97.2
1889 Female, age 72, unknown 96.7
2241 Male, age 72, unknown 92.8
2409 Female, age 72, unknown 88.8
2699 Male, age 18, unknown 87.6
1941 Male, age 53, unknown 87.0
2583 Male, age 75, right hemisphere 80.1
2590 Female, age 75, unknown 68.2
Superior colliculus
nTPM: 71.1
2668 Female, age 75, unknown 96.1
1796 Male, age 53, unknown 80.3
2087 Female, age 72, unknown 76.9
2664 Male, age 75, both hemispheres 75.2
2587 Male, age 74, left hemisphere 71.0
2261 Male, age 18, unknown 65.8
1839 Male, age 51, unknown 63.0
1913 Female, age 42, unknown 62.0
1895 Male, age 76, right hemisphere 60.9
1995 Male, age 72, unknown 59.4
Ventral tegmental area
nTPM: 76.9
1915 Female, age 42, unknown 96.5
2410 Female, age 72, unknown 85.8
2218 Male, age 76, both hemispheres 78.4
1942 Male, age 51, unknown 71.1
2223 Female, age 72, unknown 69.1
2021 Male, age 53, unknown 60.3

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 116.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 116.4
Samples: 183

Max nTPM: 204.1
Min nTPM: 67.3
Std nTPM: 25.6
Median nTPM: 114.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 204.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 196.2
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 196.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 195.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 179.7
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 177.0
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 173.7
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 172.9
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 168.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 160.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 158.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 78.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 78.0
FF:10158-103A5 76 years, female 78.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 66.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 66.0
Samples: 4

Max nTPM: 82.8
Min nTPM: 45.3
Sample A Female 82.8
Sample B Female 57.6
Sample C Male 78.2
Sample D Male 45.3
Midbrain
nTPM: 60.0
Samples: 4

Max nTPM: 69.0
Min nTPM: 53.7
Sample A Female 58.6
Sample B Female 69.0
Sample C Male 58.6
Sample D Male 53.7
Periaqueductal gray
nTPM: 55.3
Samples: 3

Max nTPM: 63.4
Min nTPM: 41.9
Sample B Female 60.5
Sample C Male 63.4
Sample D Male 41.9
Superior colliculi
nTPM: 65.2
Samples: 4

Max nTPM: 75.6
Min nTPM: 54.8
Sample A Female 75.6
Sample B Female 54.8
Sample C Male 72.7
Sample D Male 57.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 167.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 167.2
Samples: 4

Max nTPM: 177.4
Min nTPM: 157.5
Sample A Male 177.4
Sample B Male 163.4
Sample C Female 157.5
Sample D Female 170.4

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 7.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 7.5
392935 Antisense, RP_040804_02_A06, Mouse strain C57BL/6J (56 days, male) 10.7
73512199 Antisense, RP_050712_04_C08, Mouse strain C57BL/6J (56 days, male) 4.4
70919149 Antisense, RP_050712_04_C08, Mouse strain C57BL/6J (56 days, male) 2.1

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