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  • PSMC3
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:87.3 nTPM
HPA Brain:73.1 nTPM
GTEx:87.3 nTPM
FANTOM5:80.5 Scaled Tags Per Million
Pig:53.2 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

73.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 72.4
2565 Male, age 75, midline 83.6
1981 Female, age 72, midline 79.3
2194 Female, age 79, both hemispheres 74.3
2048 Male, age 55, midline 65.1
2816 Male, age 47, midline 59.5
Cervical spinal cord, dorsal horn
nTPM: 66.5
2173 Female, age 72, unknown 82.4
2296 Male, age 66, both hemispheres 65.9
2069 Male, age 47, both hemispheres 65.0
2297 Male, age 75, both hemispheres 63.4
1877 Male, age 55, unknown 62.5
2721 Male, age 90, both hemispheres 59.8
Cervical spinal cord, ventral horn
nTPM: 73.1
2480 Male, age 75, both hemispheres 83.4
2809 Male, age 90, both hemispheres 82.7
2068 Male, age 55, unknown 74.6
2098 Female, age 72, unknown 68.7
2295 Male, age 66, both hemispheres 67.4
2820 Female, age 79, both hemispheres 61.9

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

87.3
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 87.3
Samples: 204

Max nTPM: 150.2
Min nTPM: 53.8
Std nTPM: 16.1
Median nTPM: 85.5
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 150.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 144.8
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 144.5
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 133.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 133.0
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 125.3
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 122.8
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 122.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 120.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 119.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 119.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 119.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 117.4
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 112.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 111.3
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 111.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 109.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 109.8
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 107.7
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 105.7
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 105.6
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 103.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 103.1
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 102.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 102.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 102.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 102.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 102.1
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 101.6
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 100.4
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 99.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 99.5
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 99.5
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 99.4
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 99.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 99.1
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 98.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 98.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 97.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 97.9
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 97.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 97.7
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 97.4
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 97.3
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 97.1
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 96.7
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 95.9
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 95.9
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 95.7
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 95.6
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 95.5
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 95.4
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 95.3
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 95.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 95.1
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 95.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 94.7
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 94.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 94.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 94.1
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 94.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 93.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 93.7
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 93.7
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 93.6
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 93.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 93.1
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 93.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 93.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 92.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 91.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 91.9
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 91.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 91.4
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 91.4
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 91.3
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 91.1
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 90.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 90.4
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 90.1
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 90.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 89.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 89.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 89.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 88.9
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 88.8
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 88.7
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 88.7
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 88.6
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 88.1
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 88.1
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 87.8
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 87.8
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 87.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 87.5
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 86.8
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 86.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 86.0
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 85.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 85.6
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 85.6
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 85.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 85.5
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 85.4
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 84.9
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 84.9
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 84.6
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 84.5
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 84.4
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 84.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 84.2
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 84.1
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 84.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 84.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 83.9
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 83.0
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 83.0
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 82.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 82.2
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 82.0
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 81.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 81.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 80.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 80.7
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 80.7
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 80.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 80.2
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 80.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 80.2
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 79.9
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 79.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 79.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 79.4
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 79.4
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 79.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 78.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 78.7
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 78.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 78.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 78.5
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 78.5
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 78.4
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 78.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 78.3
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 78.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 78.0
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 77.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 77.3
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 77.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 77.1
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 77.1
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 76.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 76.7
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 76.6
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 76.5
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 76.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 76.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 76.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 75.9
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 75.8
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 75.5
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 75.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 75.2
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 75.1
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 74.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 74.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 74.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 74.6
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 74.1
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 74.0
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 73.9
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 73.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 73.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 73.5
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 73.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 72.9
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 71.8
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 71.2
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 70.9
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 70.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 69.9
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 69.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 68.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 68.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 68.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 68.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 67.7
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 67.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 67.6
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 66.9
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 65.9
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 65.5
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 65.2
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 65.1
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 64.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 64.2
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 61.9
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 61.6
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 61.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 60.7
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 57.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 57.2
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 56.2
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 53.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

80.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 80.5
FF:10181-103D1 60 years, female 88.2
FF:10159-103A6 76 years, female 72.9

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

53.2
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 53.2
Samples: 4

Max nTPM: 61.2
Min nTPM: 49.0
Sample A Female 51.0
Sample B Female 49.0
Sample C Male 61.2
Sample D Male 51.7
Ventral spinal cord
nTPM: 51.6
Samples: 4

Max nTPM: 57.6
Min nTPM: 46.3
Sample A Female 46.3
Sample B Female 53.5
Sample C Male 57.6
Sample D Male 49.0

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