BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:429.5 nTPM
HPA Brain:367.6 nTPM
GTEx:429.5 nTPM
FANTOM5:386.7 Scaled Tags Per Million
Macaque:167.8 nTPM
Mouse:59.3 nTPM
Rat:63.3 nTPM
Pig:169.3 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 367.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 271.7
2411 Female, age 72, unknown 319.3
1870 Female, age 42, unknown 315.8
2586 Male, age 75, left hemisphere 307.3
2019 Male, age 18, unknown 295.4
1830 Male, age 51, unknown 295.0
1833 Male, age 53, unknown 293.6
2828 Female, age 72, unknown 260.9
2219 Male, age 76, both hemispheres 237.7
1827 Male, age 72, unknown 218.7
2666 Male, age 74, left hemisphere 173.4
Dorsal raphe nucleus
nTPM: 283.1
2750 Male, age 76, both hemispheres 377.8
1828 Male, age 53, unknown 294.8
2047 Male, age 72, unknown 290.3
2016 Female, age 72, unknown 254.9
2298 Female, age 72, unknown 197.9
Inferior colliculus
nTPM: 273.0
1848 Female, age 42, unknown 312.3
1890 Male, age 53, unknown 284.5
2849 Male, age 72, unknown 248.4
2097 Female, age 72, unknown 246.8
Median raphe nucleus
nTPM: 203.2
2220 Male, age 76, midline 203.2
Periaquaductal grey, anterior
nTPM: 222.9
2502 Female, age 75, unknown 257.0
1947 Male, age 18, unknown 221.9
1795 Male, age 51, unknown 189.8
Periaquaductal grey, dorsal
nTPM: 202.8
2464 Female, age 72, unknown 257.0
1840 Male, age 53, unknown 208.3
2850 Male, age 76, both hemispheres 184.1
1831 Male, age 72, unknown 161.8
Periaquaductal grey, lateral
nTPM: 204.5
2053 Male, age 18, unknown 230.5
2272 Male, age 74, both hemispheres 192.7
2140 Male, age 76, both hemispheres 190.3
Pretectal area
nTPM: 238.7
1817 Female, age 42, unknown 315.7
2316 Male, age 76, right hemisphere 288.3
2667 Female, age 75, unknown 273.9
1815 Male, age 53, unknown 264.5
2007 Male, age 72, unknown 232.1
2224 Female, age 72, unknown 224.0
2825 Male, age 18, unknown 217.4
1944 Female, age 72, unknown 214.8
1816 Male, age 51, unknown 213.6
2273 Male, age 74, both hemispheres 205.7
2407 Male, age 75, both hemispheres 176.2
Red nucleus
nTPM: 367.6
1821 Female, age 72, unknown 445.5
1904 Male, age 53, unknown 438.5
1865 Male, age 51, unknown 435.1
1954 Female, age 42, unknown 424.4
2769 Male, age 72, unknown 423.7
2227 Male, age 72, unknown 423.3
2823 Male, age 76, right hemisphere 393.8
2503 Female, age 72, unknown 371.4
2588 Male, age 74, left hemisphere 333.4
2785 Male, age 18, unknown 298.8
2725 Female, age 75, unknown 232.0
2584 Male, age 75, left hemisphere 191.8
Substantia nigra
nTPM: 250.0
2699 Male, age 18, unknown 300.6
1851 Male, age 51, unknown 279.6
1889 Female, age 72, unknown 279.0
1916 Female, age 42, unknown 276.8
2241 Male, age 72, unknown 262.0
2409 Female, age 72, unknown 253.9
2590 Female, age 75, unknown 239.8
2583 Male, age 75, right hemisphere 232.8
1941 Male, age 53, unknown 188.9
2665 Male, age 74, both hemispheres 186.9
Superior colliculus
nTPM: 244.5
1895 Male, age 76, right hemisphere 337.5
2668 Female, age 75, unknown 282.4
1913 Female, age 42, unknown 267.3
1995 Male, age 72, unknown 257.0
1839 Male, age 51, unknown 246.9
2587 Male, age 74, left hemisphere 244.0
2087 Female, age 72, unknown 225.0
2261 Male, age 18, unknown 204.1
1796 Male, age 53, unknown 201.3
2664 Male, age 75, both hemispheres 179.4
Ventral tegmental area
nTPM: 259.1
2410 Female, age 72, unknown 322.3
2223 Female, age 72, unknown 317.4
1915 Female, age 42, unknown 252.9
2021 Male, age 53, unknown 226.7
2218 Male, age 76, both hemispheres 225.5
1942 Male, age 51, unknown 210.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 429.5
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 429.5
Samples: 183

Max nTPM: 995.0
Min nTPM: 159.2
Std nTPM: 147.2
Median nTPM: 400.5
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 995.0
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 871.3
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 864.4
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 787.8
GTEX-1NV5F-0011-R2a-SM-G8LME 60-69 years, female 785.9
GTEX-1117F-0011-R2b-SM-GI4VL 60-69 years, female 751.6
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 748.1
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 738.6
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 691.8
GTEX-1KWVE-0011-R2a-SM-G8OLX 30-39 years, male 691.5
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 679.7
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 386.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 386.7
FF:10158-103A5 76 years, female 386.7

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 167.8
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 167.8
Samples: 1

Max nTPM: 167.8
Min nTPM: 167.8
Sample A 167.8
Midbrain
nTPM: 111.8
Samples: 1

Max nTPM: 111.8
Min nTPM: 111.8
Sample A 111.8
Superior colliculi
nTPM: 153.2
Samples: 1

Max nTPM: 153.2
Min nTPM: 153.2
Sample A 153.2

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 169.3
Pig sample Sample description nTPM
Substantia nigra
nTPM: 155.9
Samples: 3

Max nTPM: 183.6
Min nTPM: 136.4
Sample A Female 183.6
Sample B Female 136.4
Sample C Male 147.8
Midbrain
nTPM: 140.1
Samples: 3

Max nTPM: 163.6
Min nTPM: 124.9
Sample B Female 163.6
Sample C Male 131.7
Sample D Male 124.9
Periaqueductal gray
nTPM: 169.3
Samples: 3

Max nTPM: 183.0
Min nTPM: 144.8
Sample B Female 183.0
Sample C Male 180.1
Sample D Male 144.8
Superior colliculi
nTPM: 150.9
Samples: 4

Max nTPM: 176.9
Min nTPM: 138.3
Sample A Female 176.9
Sample B Female 143.6
Sample C Male 144.7
Sample D Male 138.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 59.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 59.3
Samples: 4

Max nTPM: 69.1
Min nTPM: 53.6
Sample A 53.6
Sample B 69.1
Sample C 57.7
Sample D 56.9

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 63.3
Rat sample Sample description nTPM
Midbrain
nTPM: 63.3
Samples: 4

Max nTPM: 73.6
Min nTPM: 56.6
Sample A 73.6
Sample A 56.6
Sample A 58.6
Sample A 64.5

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