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  • NDUFB8
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:531.5 nTPM
HPA Brain:179.3 nTPM
GTEx:531.5 nTPM
FANTOM5:219.5 Scaled Tags Per Million
Pig:37.6 nTPM
Mouse:485.5 nTPM
Allen mouse:7.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

179.3
Sample id Sample description nTPM
Amygdala
nTPM: 170.3
2814 Male, age 76, right hemisphere 222.8
2695 Female, age 67, right hemisphere 164.6
2514 Male, age 75, right hemisphere 157.1
1987 Female, age 91, left hemisphere 154.3
2517 Female, age 94, left hemisphere 152.7
Basal amygdala
nTPM: 170.8
2685 Female, age 94, left hemisphere 178.6
2243 Female, age 91, right hemisphere 176.8
2827 Female, age 67, right hemisphere 173.8
2110 Male, age 80, left hemisphere 170.9
2609 Male, age 75, right hemisphere 163.8
1955 Male, age 76, both hemispheres 160.8
Central amygdala
nTPM: 179.3
2826 Female, age 94, left hemisphere 268.4
1905 Male, age 76, both hemispheres 191.9
2239 Male, age 80, left hemisphere 169.6
2515 Male, age 75, right hemisphere 137.9
2701 Female, age 91, right hemisphere 128.8
Corticomedial amygdala
nTPM: 167.2
2429 Female, age 94, left hemisphere 189.7
2242 Female, age 91, right hemisphere 175.1
2535 Female, age 67, right hemisphere 173.1
2829 Male, age 80, left hemisphere 160.0
2428 Male, age 75, right hemisphere 154.2
2240 Male, age 76, both hemispheres 151.4
Lateral amygdala
nTPM: 173.7
2534 Female, age 94, left hemisphere 261.8
1883 Male, age 76, both hemispheres 185.0
2516 Male, age 75, right hemisphere 177.6
2830 Female, age 67, right hemisphere 148.3
2256 Male, age 80, left hemisphere 135.1
2255 Female, age 91, right hemisphere 134.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

531.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 531.5
Samples: 181

Max nTPM: 1747.3
Min nTPM: 268.8
Std nTPM: 182.7
Median nTPM: 499.6
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 1747.3
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 1051.9
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 1042.1
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 1040.4
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 1025.9
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 1009.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 923.1
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 916.3
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 875.2
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 864.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 849.7
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 821.0
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 816.9
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 784.8
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 753.7
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 747.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 739.2
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 729.5
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 727.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 726.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 715.6
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 691.8
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 690.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 689.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 679.0
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 677.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 676.6
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 670.4
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 670.0
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 667.7
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 661.1
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 660.9
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 649.5
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 641.8
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 639.0
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 636.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 631.9
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 626.4
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 625.4
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 621.4
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 619.0
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 618.0
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 613.5
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 612.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 603.3
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 596.3
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 596.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 594.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 590.7
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 586.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 586.3
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 580.0
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 578.5
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 578.0
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 576.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 572.7
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 572.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 571.0
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 570.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 569.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 568.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 568.5
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 566.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 563.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 558.9
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 556.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 556.1
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 553.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 552.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 547.4
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 544.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 539.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 538.3
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 538.3
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 537.9
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 537.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 537.2
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 534.6
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 529.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 528.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 525.9
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 525.8
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 512.4
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 510.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 505.7
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 505.1
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 503.4
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 502.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 501.3
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 500.3
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 499.6
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 499.1
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 497.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 497.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 495.4
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 491.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 490.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 488.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 486.4
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 485.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 483.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 478.2
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 474.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 471.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 471.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 470.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 468.6
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 465.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 462.5
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 460.0
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 456.8
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 456.7
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 456.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 454.8
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 454.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 451.1
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 451.1
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 448.4
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 447.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 444.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 441.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 435.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 429.1
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 427.9
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 422.4
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 421.2
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 420.7
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 420.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 420.1
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 420.1
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 419.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 418.9
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 416.3
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 415.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 415.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 413.3
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 410.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 406.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 404.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 404.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 396.8
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 395.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 392.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 391.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 391.5
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 390.9
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 390.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 389.1
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 387.2
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 381.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 380.7
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 373.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 371.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 365.7
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 365.4
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 365.1
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 362.0
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 361.6
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 360.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 359.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 358.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 357.7
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 352.4
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 350.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 350.8
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 350.0
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 347.4
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 345.1
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 344.9
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 337.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 334.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 332.8
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 328.5
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 325.4
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 308.3
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 301.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 299.0
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 284.5
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 278.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 278.1
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 268.8
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

219.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 219.5
FF:10151-102I7 76 years, female 219.5

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

37.6
Pig sample Sample description nTPM
Amygdala
nTPM: 37.6
Samples: 4

Max nTPM: 48.6
Min nTPM: 29.5
Sample A Female 48.6
Sample B Female 40.6
Sample C Male 31.5
Sample D Male 29.5

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

485.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 485.5
Samples: 4

Max nTPM: 518.4
Min nTPM: 456.2
Sample A Male 461.1
Sample B Male 506.2
Sample C Female 518.4
Sample D Female 456.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

7.8
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.8
71234620 Antisense, RP_050505_02_D08, Mouse strain C57BL/6J (56 days, male) 9.5
74743256 Antisense, RP_060220_04_E02, Mouse strain C57BL/6J (56 days, male) 6.1

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