MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:372.9 nTPM
HPA Brain:208.7 nTPM
GTEx:372.9 nTPM
FANTOM5:165.6 Scaled Tags Per Million
Pig:67.8 nTPM
Mouse:504.4 nTPM
Allen mouse:8.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 208.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 147.4
1827 Male, age 72, unknown 169.4
2666 Male, age 74, left hemisphere 167.0
2219 Male, age 76, both hemispheres 159.7
1870 Female, age 42, unknown 154.2
2586 Male, age 75, left hemisphere 149.7
2019 Male, age 18, unknown 149.2
2828 Female, age 72, unknown 142.7
2411 Female, age 72, unknown 138.2
1833 Male, age 53, unknown 125.6
1830 Male, age 51, unknown 118.8
Dorsal raphe nucleus
nTPM: 151.2
2750 Male, age 76, both hemispheres 167.3
2298 Female, age 72, unknown 163.1
1828 Male, age 53, unknown 153.2
2047 Male, age 72, unknown 149.3
2016 Female, age 72, unknown 123.2
Inferior colliculus
nTPM: 151.7
2097 Female, age 72, unknown 158.8
1890 Male, age 53, unknown 156.1
1848 Female, age 42, unknown 147.1
2849 Male, age 72, unknown 144.7
Median raphe nucleus
nTPM: 208.7
2220 Male, age 76, midline 208.7
Periaquaductal grey, anterior
nTPM: 178.2
1947 Male, age 18, unknown 184.2
1795 Male, age 51, unknown 178.3
2502 Female, age 75, unknown 172.0
Periaquaductal grey, dorsal
nTPM: 133.9
1840 Male, age 53, unknown 147.1
2850 Male, age 76, both hemispheres 141.8
1831 Male, age 72, unknown 126.9
2464 Female, age 72, unknown 119.7
Periaquaductal grey, lateral
nTPM: 123.5
2053 Male, age 18, unknown 130.6
2272 Male, age 74, both hemispheres 120.2
2140 Male, age 76, both hemispheres 119.7
Pretectal area
nTPM: 168.6
1944 Female, age 72, unknown 221.4
2007 Male, age 72, unknown 215.7
1816 Male, age 51, unknown 215.4
1817 Female, age 42, unknown 201.4
2667 Female, age 75, unknown 170.2
1815 Male, age 53, unknown 169.5
2224 Female, age 72, unknown 167.9
2825 Male, age 18, unknown 145.0
2273 Male, age 74, both hemispheres 119.1
2407 Male, age 75, both hemispheres 115.3
2316 Male, age 76, right hemisphere 113.5
Red nucleus
nTPM: 147.4
1821 Female, age 72, unknown 177.7
2725 Female, age 75, unknown 172.7
2503 Female, age 72, unknown 161.4
2785 Male, age 18, unknown 160.7
2584 Male, age 75, left hemisphere 144.3
2227 Male, age 72, unknown 142.8
2769 Male, age 72, unknown 141.0
1954 Female, age 42, unknown 139.8
1865 Male, age 51, unknown 138.0
2823 Male, age 76, right hemisphere 134.9
1904 Male, age 53, unknown 133.0
2588 Male, age 74, left hemisphere 122.3
Substantia nigra
nTPM: 173.4
1916 Female, age 42, unknown 240.9
1889 Female, age 72, unknown 223.3
1851 Male, age 51, unknown 192.3
1941 Male, age 53, unknown 184.2
2665 Male, age 74, both hemispheres 179.1
2241 Male, age 72, unknown 163.4
2699 Male, age 18, unknown 153.9
2409 Female, age 72, unknown 151.3
2583 Male, age 75, right hemisphere 123.5
2590 Female, age 75, unknown 122.0
Superior colliculus
nTPM: 150.0
1796 Male, age 53, unknown 182.8
2087 Female, age 72, unknown 181.8
2668 Female, age 75, unknown 174.2
1895 Male, age 76, right hemisphere 157.1
2261 Male, age 18, unknown 150.9
1913 Female, age 42, unknown 143.9
2587 Male, age 74, left hemisphere 137.8
1839 Male, age 51, unknown 132.7
1995 Male, age 72, unknown 119.5
2664 Male, age 75, both hemispheres 119.1
Ventral tegmental area
nTPM: 166.9
2218 Male, age 76, both hemispheres 193.1
1915 Female, age 42, unknown 186.3
2410 Female, age 72, unknown 168.1
1942 Male, age 51, unknown 162.3
2223 Female, age 72, unknown 158.7
2021 Male, age 53, unknown 132.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 372.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 372.9
Samples: 183

Max nTPM: 814.9
Min nTPM: 189.0
Std nTPM: 98.6
Median nTPM: 358.8
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 814.9
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 629.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 620.3
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 597.8
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 589.6
GTEX-15SHU-0011-R2a-SM-GPRXS 40-49 years, female 584.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 577.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 565.8
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 554.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 553.2
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 550.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 165.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 165.6
FF:10158-103A5 76 years, female 165.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 67.8
Pig sample Sample description nTPM
Substantia nigra
nTPM: 64.6
Samples: 4

Max nTPM: 92.9
Min nTPM: 42.3
Sample A Female 92.9
Sample B Female 57.0
Sample C Male 66.3
Sample D Male 42.3
Midbrain
nTPM: 66.4
Samples: 4

Max nTPM: 73.7
Min nTPM: 59.8
Sample A Female 67.7
Sample B Female 73.7
Sample C Male 64.2
Sample D Male 59.8
Periaqueductal gray
nTPM: 55.4
Samples: 3

Max nTPM: 61.4
Min nTPM: 46.4
Sample B Female 61.4
Sample C Male 58.5
Sample D Male 46.4
Superior colliculi
nTPM: 67.8
Samples: 4

Max nTPM: 80.6
Min nTPM: 58.0
Sample A Female 80.6
Sample B Female 60.4
Sample C Male 72.1
Sample D Male 58.0

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 504.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 504.4
Samples: 4

Max nTPM: 569.6
Min nTPM: 437.2
Sample A Male 569.6
Sample B Male 473.2
Sample C Female 437.2
Sample D Female 537.6

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
71234620 Antisense, RP_050505_02_D08, Mouse strain C57BL/6J (56 days, male) 9.6
74743256 Antisense, RP_060220_04_E02, Mouse strain C57BL/6J (56 days, male) 7.7

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