We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
CKB
HPA
RESOURCES
  • TISSUE
  • BRAIN
  • SINGLE CELL
  • SUBCELLULAR
  • CANCER
  • BLOOD
  • CELL LINE
  • STRUCTURE
  • INTERACTION
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
HELP
  • HELP & FAQ
  • ANTIBODY AVAILABILITY
  • DISCLAIMER
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Category
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Antibody panel
Tissue
Main location
Patient ID
Annotation
Tissue
Category
Tau score
Cluster
Reliability
Brain region
Category
Tau score
Brain region
Category
Tau score
Brain region
Category
Tau score
Cluster
Reliability
Tissue
Cell type
Enrichment
Cell type
Category
Tau score
Cell type group
Category
Tau score
Cell type
Category
Tau score
Cell type
Category
Tau score
Cell lineage
Category
Tau score
Cluster
Cluster
Location
Searches
Location
Cell line
Class
Type
Phase
Reliability
Cancer
Prognosis
Cancer
Category
Cancer
Category
Tau score
Cluster
Variants
Interacting gene (ensg_id)
Type
Number of interactions
Pathway
ipTM
Category
Category
Category
Category
Validation
Validation
Validation
Validation
Antibodies
Data type
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • SUBCELL

  • CANCER

  • BLOOD

  • CELL LINE

  • STRUCTURE

  • INTERACTION

  • CKB
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Medium
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:1419.7 nTPM
FANTOM5:4265.0 Scaled Tags Per Million
Pig:1154.7 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001254Antibody CAB047313
Glial cells LowMedium
Neuronal cells Not detectedNot detected





CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1419.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1419.7
Samples: 300

Max nTPM: 2848.5
Min nTPM: 333.5
Std nTPM: 445.1
Median nTPM: 1416.3
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 2848.5
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 2595.6
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 2486.5
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 2472.2
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 2448.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 2395.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 2353.7
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 2286.7
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 2277.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 2268.4
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 2246.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 2242.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 2230.5
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 2219.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 2185.4
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 2182.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 2182.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 2172.3
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 2163.9
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 2129.1
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 2098.0
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 2092.4
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 2077.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 2061.5
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 2025.9
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 2023.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 2021.9
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 2021.8
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 1999.8
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 1964.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 1963.3
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 1961.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 1939.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 1933.3
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 1929.5
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 1919.4
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 1917.5
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 1916.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 1907.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 1895.4
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 1893.7
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 1888.6
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 1883.5
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 1878.6
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 1876.3
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 1874.1
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 1851.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 1847.4
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 1846.1
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 1845.0
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 1841.5
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 1840.1
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 1837.4
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 1835.2
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 1832.7
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 1824.9
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 1815.5
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 1799.3
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 1798.7
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 1798.3
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 1798.1
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 1796.7
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 1789.9
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 1788.4
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 1783.2
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 1779.1
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 1776.5
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 1775.8
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 1774.5
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 1772.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 1772.0
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 1769.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 1769.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 1759.3
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 1750.3
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 1739.3
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 1735.7
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 1734.4
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 1724.8
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 1717.8
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 1713.2
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 1712.5
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 1710.6
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 1700.9
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 1698.8
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 1691.1
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 1685.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 1665.5
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 1664.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 1663.7
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 1654.1
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 1651.5
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 1645.5
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 1643.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 1640.9
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 1633.6
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 1631.5
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 1627.6
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 1619.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 1618.8
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 1614.9
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 1611.7
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 1610.6
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 1608.3
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 1607.6
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 1602.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 1600.4
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 1584.4
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 1583.2
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 1578.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 1572.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 1569.8
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 1569.6
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 1565.3
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 1563.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 1561.6
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 1552.8
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 1549.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 1541.2
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 1538.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 1535.8
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 1533.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 1530.6
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 1529.0
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 1526.8
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 1526.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 1525.2
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 1522.9
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 1516.0
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 1515.1
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 1512.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 1506.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 1504.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 1504.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 1502.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 1496.0
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 1493.5
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 1487.2
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 1478.9
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 1477.2
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 1473.2
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 1467.2
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 1466.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 1461.1
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 1454.8
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 1441.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 1440.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 1432.3
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 1424.2
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 1416.6
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 1415.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 1402.3
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 1398.1
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 1396.3
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 1394.0
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 1390.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 1388.2
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 1373.8
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 1366.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 1353.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 1353.6
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 1348.1
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 1326.7
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 1321.6
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 1321.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 1317.3
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 1311.5
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 1311.2
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 1302.2
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 1302.0
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 1296.7
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 1293.2
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 1290.5
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 1290.3
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 1287.5
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 1287.4
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 1286.7
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 1278.6
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 1276.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 1275.0
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 1267.2
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 1263.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 1261.7
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 1253.2
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 1252.0
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 1249.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 1248.9
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 1248.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 1246.7
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 1243.8
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 1235.6
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 1210.2
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 1206.0
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 1204.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 1204.2
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 1193.5
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 1192.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 1192.7
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 1186.7
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 1185.9
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 1177.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 1175.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 1175.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 1164.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 1162.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 1153.8
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 1151.8
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 1151.0
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 1149.2
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 1141.4
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 1140.4
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 1136.3
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 1132.3
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 1130.9
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 1127.4
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 1127.0
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 1124.4
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 1123.5
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 1121.2
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 1118.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 1096.4
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 1092.3
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 1088.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 1084.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 1084.0
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 1082.7
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 1073.6
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 1072.6
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 1071.6
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 1071.5
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 1068.1
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 1061.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 1054.8
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 1052.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 1046.9
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 1037.7
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 1033.3
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 1032.4
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 1027.7
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 1023.7
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 1018.1
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 1006.1
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 1006.0
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 1004.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 1004.1
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 994.1
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 986.7
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 985.1
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 979.2
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 978.7
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 973.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 972.6
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 972.1
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 960.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 960.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 959.3
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 953.5
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 952.7
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 948.5
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 947.3
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 942.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 940.7
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 935.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 928.3
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 926.2
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 903.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 900.1
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 886.2
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 883.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 882.5
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 876.9
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 874.8
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 873.6
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 866.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 860.6
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 850.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 806.0
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 802.7
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 800.9
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 794.7
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 794.2
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 779.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 771.9
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 762.4
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 747.0
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 718.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 715.4
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 690.5
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 688.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 657.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 636.6
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 631.5
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 579.4
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 573.4
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 529.3
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 493.3
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 438.0
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 406.4
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 387.3
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 333.5
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

4265.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 4265.0
FF:10164-103B2 76 years, female 4265.0

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1154.7
Pig sample Sample description nTPM
Caudate
nTPM: 1154.7
Samples: 4

Max nTPM: 1499.6
Min nTPM: 847.8
Sample A Female 847.8
Sample B Female 1217.6
Sample C Male 1499.6
Sample D Male 1053.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
KAW logo The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.

Facebook logo X logo Bluesky logo Linkedin logo RSS feed logo contact@proteinatlas.org
GCBR logo Elixir core logo SciLifeLab logo Uppsala university logo KI logo KTH logo