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TISSUE PRIMARY DATA RETINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Tissue proteome
Eye
Retina
Tissue methods
RETINA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:438.2 nTPM
GTEx:438.2 nTPM
FANTOM5:2086.8 Scaled Tags Per Million
EYE - SINGLE CELL RNA EXPRESSION
Explore single cell type data

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

438.2
GTEx sample id Sample description nTPM
Retina
Average nTPM: 438.2
Samples: 105

Max nTPM: 1387.0
Min nTPM: 11.3
Std nTPM: 304.1
Median nTPM:
352_1 62 years, male 1387.0
356_1 87 years, female 1264.6
163_1 78 years, male 1120.7
354_1 81 years, female 1073.9
319_1 81 years, male 1029.8
353_1 82 years, female 1006.4
355_1 70 years, female 974.9
386_1 76 years, male 916.7
377_1 82 years, female 902.2
172_1 72 years, female 887.8
351_1 91 years, male 853.0
350_1 84 years, female 839.5
218_1 71 years, female 780.3
349_1 83 years, male 768.9
292_1 71 years, male 761.7
376_1 75 years, female 758.7
394_1 75 years, female 754.5
177_1 74 years, male 733.1
243_1 75 years, male 732.3
452_1 88 years, female 729.0
506_1 65 years, male 725.1
320_1 89 years, female 710.6
251_1 78 years, male 688.3
503_1 68 years, male 681.1
425_1 59 years, female 672.2
335_1 73 years, female 669.2
293_1 68 years, female 655.4
517_1 88 years, male 618.4
321_1 62 years, female 607.6
286_1 68 years, female 592.7
237_1 82 years, male 583.2
389_1 86 years, female 579.0
480_1 63 years, male 574.3
406_1 79 years, male 572.1
6_1 73 years, female 543.2
295_1 61 years, female 533.2
384_1 83 years, male 520.2
348_1 84 years, male 508.0
264_1 73 years, female 507.1
189_1 76 years, male 506.3
447_1 81 years, male 503.4
318_1 68 years, male 498.6
379_1 60 years, male 486.5
322_1 76 years, male 483.7
316_1 62 years, male 465.4
375_1 74 years, female 460.8
526_1 61 years, male 442.8
99_1 64 years, male 428.7
173_1 67 years, male 425.0
404_1 82 years, female 414.9
291_1 76 years, male 414.6
405_1 91 years, male 404.7
217_1 76 years, male 395.4
115_1 83 years, male 391.6
229_1 69 years, female 391.3
317_1 60 years, male 390.8
9_1 66 years, female 379.4
153_1 70 years, female 378.9
468_1 89 years, male 360.5
137_1 83 years, male 333.0
396_1 62 years, male 311.6
254_1 77 years, female 309.0
4_1 88 years, female 307.6
2_1 77 years, female 296.6
246_1 77 years, male 293.9
18_1 88 years, male 282.2
518_1 75 years, female 278.2
265_1 87 years, male 273.2
145_1 84 years, male 264.1
35_1 74 years, female 256.8
17_1 71 years, male 251.3
266_1 85 years, male 249.3
347_1 72 years, male 248.4
126_1 63 years, male 219.6
120_1 70 years, female 216.1
288_1 66 years, female 214.9
109_1 81 years, female 207.4
42_1 85 years, male 200.3
117_1 61 years, male 171.6
41_1 94 years, female 167.0
314_1 67 years, male 161.6
311_1 78 years, male 150.7
324_1 76 years, male 146.2
162_1 79 years, female 144.8
81_1 67 years, male 134.3
313_1 79 years, female 130.5
307_1 66 years, female 128.0
499_1 55 years, female 127.6
32_1 67 years, male 120.0
142_1 61 years, female 119.2
315_1 62 years, female 97.4
139_1 64 years, female 95.5
43_1 64 years, female 85.6
119_1 70 years, female 65.9
415_1 77 years, female 64.5
414_1 84 years, female 63.7
89_1 63 years, male 62.3
501_1 88 years, male 56.7
466_1 57 years, female 54.9
308_1 70 years, female 53.2
149_1 88 years, male 48.1
495_1 57 years, female 44.6
413_1 59 years, female 33.9
490_1 67 years, female 15.4
491_1 89 years, female 11.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

2086.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 2086.8
FF:10030-101E3 24-65 years, mixed 2086.8

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