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TISSUE PRIMARY DATA VAGINA Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Vagina
Tissue proteome
Vagina
Tissue methods
VAGINA - Expression summary
Protein expression
Vaginai

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Squamous epithelial cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:151.2 nTPM
GTEx:151.2 nTPM
FANTOM5:457.8 Scaled Tags Per Million

VAGINA - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA001254Antibody CAB047313
Squamous epithelial cells Not detectedNot detected

VAGINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

151.2
GTEx sample id Sample description nTPM
Vagina
Average nTPM: 151.2
Samples: 170

Max nTPM: 723.0
Min nTPM: 22.6
Std nTPM: 120.8
Median nTPM: 118.8
GTEX-YFC4-2926-SM-5IFJ8 40-49 years, female 723.0
GTEX-OXRK-2026-SM-GOQY5 50-59 years, female 610.2
GTEX-1QCLZ-2226-SM-DTX7R 60-69 years, female 576.6
GTEX-WEY5-0826-SM-4LMIH 40-49 years, female 545.6
GTEX-12WSJ-1326-SM-5GCOB 40-49 years, female 506.4
GTEX-ZQG8-1126-SM-51MRL 60-69 years, female 498.1
GTEX-11EM3-1826-SM-5A5KO 20-29 years, female 439.1
GTEX-XUZC-1226-SM-4BRVJ 30-39 years, female 412.3
GTEX-T2IS-1926-SM-4DM74 20-29 years, female 411.4
GTEX-UJHI-1326-SM-4IHJO 50-59 years, female 410.7
GTEX-1QPFJ-1626-SM-DTX7X 30-39 years, female 405.6
GTEX-QCQG-1226-SM-48U23 50-59 years, female 393.1
GTEX-1I4MK-1726-SM-ARL7O 50-59 years, female 392.2
GTEX-12WSD-2926-SM-5LZUH 60-69 years, female 378.9
GTEX-RU1J-1426-SM-46MUV 20-29 years, female 327.6
GTEX-145ME-1426-SM-5RQJS 40-49 years, female 297.2
GTEX-ZV6S-1326-SM-59HJA 40-49 years, female 294.8
GTEX-146FR-2426-SM-5NQAU 60-69 years, female 282.8
GTEX-1AMFI-1526-SM-73KVY 50-59 years, female 272.7
GTEX-13D11-1326-SM-5IJFY 50-59 years, female 266.5
GTEX-W5WG-1026-SM-4LMIF 50-59 years, female 262.2
GTEX-RWS6-1726-SM-47JXP 60-69 years, female 260.4
GTEX-ZGAY-2226-SM-4YCCX 40-49 years, female 259.8
GTEX-1GN1W-1526-SM-7P8TG 50-59 years, female 258.0
GTEX-1PIEJ-1926-SM-EVYB7 20-29 years, female 256.0
GTEX-XV7Q-1626-SM-4BRWC 40-49 years, female 242.2
GTEX-13W3W-2326-SM-5LU4Y 60-69 years, female 242.1
GTEX-1NUQO-1826-SM-E6CQU 20-29 years, female 241.7
GTEX-1HFI7-1126-SM-A96S5 50-59 years, female 231.9
GTEX-ZYVF-0326-SM-5GIES 50-59 years, female 231.3
GTEX-14PJ6-1626-SM-6872D 60-69 years, female 224.3
GTEX-13N11-1526-SM-5L3FL 50-59 years, female 219.8
GTEX-TML8-1126-SM-4DXSS 40-49 years, female 214.8
GTEX-WI4N-2626-SM-GPI8F 40-49 years, female 211.7
GTEX-P4PP-2526-SM-3P61P 30-39 years, female 211.6
GTEX-X8HC-2826-SM-46MWJ 50-59 years, female 211.0
GTEX-TMMY-1926-SM-4DXUU 40-49 years, female 209.1
GTEX-PX3G-2526-SM-48TZV 20-29 years, female 208.1
GTEX-13OVI-0926-SM-5J1MI 60-69 years, female 195.1
GTEX-131XG-2126-SM-5DUXG 50-59 years, female 185.1
GTEX-PWN1-2526-SM-48TDS 40-49 years, female 183.4
GTEX-14JG6-0726-SM-69LQH 30-39 years, female 183.1
GTEX-RTLS-2126-SM-GPRWH 60-69 years, female 177.3
GTEX-13QBU-1726-SM-5IJFQ 40-49 years, female 177.0
GTEX-ZP4G-0826-SM-4WWF3 20-29 years, female 176.3
GTEX-147F3-1526-SM-5MR7L 50-59 years, female 171.1
GTEX-1GMR8-2526-SM-7RHI9 50-59 years, female 170.4
GTEX-ZAK1-2426-SM-EXOHM 50-59 years, female 169.9
GTEX-13PL7-2726-SM-5L3GB 60-69 years, female 166.4
GTEX-11GSP-2226-SM-5HL5Q 60-69 years, female 166.3
GTEX-12ZZX-1926-SM-5EGKC 40-49 years, female 165.3
GTEX-1399U-1526-SM-5J2N7 50-59 years, female 164.5
GTEX-11VI4-0726-SM-5GU5B 40-49 years, female 162.1
GTEX-OHPL-2526-SM-3MJGT 60-69 years, female 160.7
GTEX-1I1GT-1226-SM-B2LVK 60-69 years, female 159.2
GTEX-14PJM-2926-SM-69LOE 50-59 years, female 154.5
GTEX-ZVT2-0626-SM-5GICR 50-59 years, female 154.5
GTEX-X15G-1926-SM-4PQZQ 50-59 years, female 153.2
GTEX-1IE54-2626-SM-CMKFY 40-49 years, female 152.1
GTEX-ZLWG-1126-SM-4WWFQ 50-59 years, female 147.6
GTEX-13U4I-2026-SM-5LU3L 40-49 years, female 144.1
GTEX-17JCI-2526-SM-7DHLB 60-69 years, female 143.0
GTEX-OHPN-2426-SM-E9TI5 60-69 years, female 138.1
GTEX-14DAQ-2326-SM-5S2QX 60-69 years, female 137.7
GTEX-1EWIQ-2326-SM-7IGNF 70-79 years, female 137.6
GTEX-1QP28-1426-SM-EVR4E 50-59 years, female 137.6
GTEX-1GN1U-2426-SM-9KNTU 50-59 years, female 137.2
GTEX-YJ8O-1226-SM-5P9JE 40-49 years, female 136.9
GTEX-13QIC-1826-SM-5J1MY 60-69 years, female 134.4
GTEX-145LS-2526-SM-5TDC9 60-69 years, female 133.9
GTEX-WRHU-2926-SM-4MVNQ 50-59 years, female 130.3
GTEX-14A5I-2726-SM-5MR84 50-59 years, female 129.5
GTEX-S4UY-1026-SM-4AD53 40-49 years, female 128.6
GTEX-XUW1-0326-SM-4BOOR 50-59 years, female 128.2
GTEX-1LGRB-2126-SM-COH48 50-59 years, female 127.3
GTEX-1S5ZU-2626-SM-E9TII 20-29 years, female 126.7
GTEX-QDT8-2526-SM-48TYX 30-39 years, female 126.2
GTEX-15ER7-2526-SM-7KUFW 20-29 years, female 125.7
GTEX-146FH-2626-SM-5Q5E1 50-59 years, female 125.3
GTEX-O5YV-2226-SM-HM8V7 60-69 years, female 124.6
GTEX-ZVT3-2726-SM-5GU5X 60-69 years, female 124.1
GTEX-13PVR-1426-SM-5S2PW 60-69 years, female 123.8
GTEX-1ICG6-1626-SM-ARL81 70-79 years, female 123.8
GTEX-1MCC2-1126-SM-EVYD6 30-39 years, female 119.6
GTEX-TSE9-2526-SM-4DXUS 60-69 years, female 119.4
GTEX-XYKS-2826-SM-H7OG8 60-69 years, female 118.2
GTEX-18A7A-2826-SM-7LT8J 50-59 years, female 117.5
GTEX-ZVZQ-2726-SM-GPRY1 60-69 years, female 112.7
GTEX-13FTY-2026-SM-GIN9K 40-49 years, female 111.1
GTEX-15UF6-2126-SM-6M46Z 70-79 years, female 110.3
GTEX-1399S-2326-SM-5K7YV 30-39 years, female 108.6
GTEX-1HCUA-1026-SM-A9SMI 50-59 years, female 104.7
GTEX-1C475-0526-SM-793AC 40-49 years, female 103.7
GTEX-1F5PL-1826-SM-7P8PP 40-49 years, female 100.9
GTEX-1LH75-1726-SM-DHXKZ 50-59 years, female 100.0
GTEX-16NPV-2526-SM-6M483 50-59 years, female 98.3
GTEX-11TTK-2726-SM-5GU58 60-69 years, female 97.3
GTEX-15DYW-2926-SM-6PANA 60-69 years, female 97.2
GTEX-1LNCM-1026-SM-E9U5D 50-59 years, female 95.2
GTEX-ZTPG-2226-SM-57WF9 20-29 years, female 94.6
GTEX-14BMU-1926-SM-5S2QC 20-29 years, female 93.5
GTEX-1J8EW-2526-SM-CKZO2 60-69 years, female 93.5
GTEX-14H4A-2426-SM-664OQ 40-49 years, female 92.9
GTEX-18D9A-1026-SM-7KFRU 30-39 years, female 89.9
GTEX-U3ZN-0926-SM-4DXTU 30-39 years, female 89.5
GTEX-11DXX-1726-SM-5H11T 60-69 years, female 86.9
GTEX-W5X1-2226-SM-GRR1G 40-49 years, female 86.9
GTEX-WYVS-1426-SM-4ONCV 40-49 years, female 85.2
GTEX-131YS-2426-SM-5J2OD 60-69 years, female 84.9
GTEX-113JC-1926-SM-5N9GE 50-59 years, female 83.0
GTEX-T6MO-1226-SM-4DM5S 40-49 years, female 80.8
GTEX-P78B-2226-SM-3P5ZZ 40-49 years, female 79.5
GTEX-15SB6-1426-SM-7KUEM 50-59 years, female 79.2
GTEX-SE5C-1126-SM-4BRWZ 40-49 years, female 79.0
GTEX-1HBPM-2726-SM-9WYUA 60-69 years, female 78.6
GTEX-N7MT-1926-SM-3LK5N 60-69 years, female 78.3
GTEX-16MT8-2426-SM-GQ1DK 60-69 years, female 78.0
GTEX-1JN1M-2326-SM-ARZNG 60-69 years, female 77.1
GTEX-1R9JW-1426-SM-DTX9K 30-39 years, female 75.7
GTEX-ZC5H-2226-SM-4WAWS 40-49 years, female 75.7
GTEX-1LGOU-1126-SM-D3LAI 20-29 years, female 75.5
GTEX-SN8G-2626-SM-EXUQT 50-59 years, female 74.0
GTEX-S4P3-1126-SM-4AD52 50-59 years, female 73.4
GTEX-11XUK-1326-SM-5EQM4 40-49 years, female 73.1
GTEX-183WM-2126-SM-7LG4I 70-79 years, female 72.2
GTEX-1117F-2526-SM-5GZY6 60-69 years, female 71.9
GTEX-R45C-2226-SM-GQ1EF 60-69 years, female 71.6
GTEX-ZYY3-2626-SM-5N9DH 60-69 years, female 71.5
GTEX-WYBS-2826-SM-GOQYI 60-69 years, female 71.4
GTEX-11I78-2026-SM-5987C 50-59 years, female 70.5
GTEX-S7SF-1426-SM-4AT5A 20-29 years, female 70.4
GTEX-1HBPH-2926-SM-9WPNX 40-49 years, female 69.6
GTEX-1MCYP-1326-SM-EV7AD 20-29 years, female 69.6
GTEX-OHPK-2526-SM-3MJH9 50-59 years, female 67.0
GTEX-15SHU-2926-SM-7KUKT 40-49 years, female 66.6
GTEX-1JN76-1526-SM-CNPPF 20-29 years, female 66.2
GTEX-PWCY-1726-SM-48TD3 20-29 years, female 64.7
GTEX-Q734-1426-SM-DTXFX 40-49 years, female 64.1
GTEX-14AS3-1726-SM-5RQJV 40-49 years, female 62.9
GTEX-1F48J-2526-SM-7P8TU 50-59 years, female 62.9
GTEX-11P81-2126-SM-5HL6N 30-39 years, female 62.0
GTEX-17F9Y-2326-SM-7DUFP 70-79 years, female 61.9
GTEX-1A8FM-2426-SM-7IGPE 50-59 years, female 61.0
GTEX-1CAMS-2326-SM-793CR 40-49 years, female 60.6
GTEX-1HCU6-2326-SM-ACKXP 60-69 years, female 59.6
GTEX-15SDE-1726-SM-6LPJS 50-59 years, female 56.8
GTEX-14PN3-1626-SM-6AJAV 60-69 years, female 56.3
GTEX-ZE7O-2426-SM-57WD7 50-59 years, female 55.6
GTEX-RNOR-2526-SM-F21KT 50-59 years, female 55.3
GTEX-NPJ7-2526-SM-EV79A 60-69 years, female 55.2
GTEX-1LVAN-1626-SM-CNPQ7 50-59 years, female 54.1
GTEX-16NGA-1626-SM-72D6M 40-49 years, female 53.4
GTEX-11EMC-1926-SM-5A5JU 60-69 years, female 53.2
GTEX-1IDJU-1026-SM-AHZ2U 60-69 years, female 51.9
GTEX-1LKK1-1826-SM-GNIPA 50-59 years, female 51.9
GTEX-ZXES-0626-SM-5E45P 30-39 years, female 51.6
GTEX-Y3IK-2226-SM-4YCD4 50-59 years, female 51.4
GTEX-1J1OQ-1826-SM-CL53R 40-49 years, female 50.8
GTEX-14PKU-1326-SM-6871B 40-49 years, female 50.6
GTEX-QVJO-2526-SM-CYPRA 60-69 years, female 47.7
GTEX-1GF9U-1926-SM-7P8TZ 40-49 years, female 47.0
GTEX-S341-1226-SM-4AD5S 40-49 years, female 46.9
GTEX-139D8-2626-SM-GJ3QN 30-39 years, female 45.0
GTEX-1LVAM-1926-SM-E6CIM 50-59 years, female 43.7
GTEX-PLZ4-2726-SM-3P61A 50-59 years, female 40.8
GTEX-ZAJG-2926-SM-5HL8P 50-59 years, female 34.2
GTEX-1JMQL-2326-SM-CNNPV 50-59 years, female 34.0
GTEX-ZZPU-2226-SM-5EGIV 50-59 years, female 31.5
GTEX-132AR-1626-SM-5EGHP 50-59 years, female 27.9
GTEX-1MA7W-1226-SM-HL9SB 20-29 years, female 22.6
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VAGINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

457.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Vagina
Scaled Tags Per Million: 457.8
FF:10204-103F6 68 years, female 457.8

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