MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:86.1 nTPM
HPA Brain:93.6 nTPM
GTEx:86.1 nTPM
FANTOM5:239.0 Scaled Tags Per Million
Pig:45.9 nTPM
Mouse:23.5 nTPM
Allen mouse:0.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 93.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.5
1870 Female, age 42, unknown 89.4
2019 Male, age 18, unknown 87.6
1833 Male, age 53, unknown 87.3
1830 Male, age 51, unknown 87.1
2411 Female, age 72, unknown 86.9
2666 Male, age 74, left hemisphere 79.1
1827 Male, age 72, unknown 69.7
2828 Female, age 72, unknown 69.5
2586 Male, age 75, left hemisphere 64.2
2219 Male, age 76, both hemispheres 54.0
Dorsal raphe nucleus
nTPM: 57.4
2750 Male, age 76, both hemispheres 82.2
1828 Male, age 53, unknown 59.3
2016 Female, age 72, unknown 52.7
2047 Male, age 72, unknown 47.6
2298 Female, age 72, unknown 45.0
Inferior colliculus
nTPM: 57.8
1848 Female, age 42, unknown 61.3
1890 Male, age 53, unknown 57.0
2097 Female, age 72, unknown 56.9
2849 Male, age 72, unknown 56.2
Median raphe nucleus
nTPM: 52.8
2220 Male, age 76, midline 52.8
Periaquaductal grey, anterior
nTPM: 56.9
1947 Male, age 18, unknown 63.2
2502 Female, age 75, unknown 59.1
1795 Male, age 51, unknown 48.4
Periaquaductal grey, dorsal
nTPM: 40.3
2464 Female, age 72, unknown 56.3
1831 Male, age 72, unknown 42.6
2850 Male, age 76, both hemispheres 32.9
1840 Male, age 53, unknown 29.3
Periaquaductal grey, lateral
nTPM: 45.9
2053 Male, age 18, unknown 51.8
2272 Male, age 74, both hemispheres 49.2
2140 Male, age 76, both hemispheres 36.7
Pretectal area
nTPM: 60.8
1815 Male, age 53, unknown 85.0
1817 Female, age 42, unknown 76.3
2007 Male, age 72, unknown 73.1
2316 Male, age 76, right hemisphere 63.9
2407 Male, age 75, both hemispheres 61.9
1816 Male, age 51, unknown 61.5
2667 Female, age 75, unknown 53.6
2825 Male, age 18, unknown 52.0
1944 Female, age 72, unknown 50.4
2224 Female, age 72, unknown 47.5
2273 Male, age 74, both hemispheres 43.4
Red nucleus
nTPM: 93.6
1865 Male, age 51, unknown 111.0
1821 Female, age 72, unknown 104.2
1904 Male, age 53, unknown 104.0
2503 Female, age 72, unknown 95.6
1954 Female, age 42, unknown 95.3
2785 Male, age 18, unknown 93.1
2588 Male, age 74, left hemisphere 92.9
2769 Male, age 72, unknown 91.1
2823 Male, age 76, right hemisphere 88.7
2227 Male, age 72, unknown 84.3
2725 Female, age 75, unknown 83.6
2584 Male, age 75, left hemisphere 79.9
Substantia nigra
nTPM: 60.8
2409 Female, age 72, unknown 79.2
1889 Female, age 72, unknown 76.9
2583 Male, age 75, right hemisphere 69.2
1851 Male, age 51, unknown 64.8
1941 Male, age 53, unknown 57.3
2590 Female, age 75, unknown 56.9
2241 Male, age 72, unknown 54.0
2699 Male, age 18, unknown 52.8
1916 Female, age 42, unknown 52.1
2665 Male, age 74, both hemispheres 44.9
Superior colliculus
nTPM: 71.4
1913 Female, age 42, unknown 96.5
2668 Female, age 75, unknown 86.7
1995 Male, age 72, unknown 86.6
1895 Male, age 76, right hemisphere 82.4
2587 Male, age 74, left hemisphere 76.5
1796 Male, age 53, unknown 65.0
1839 Male, age 51, unknown 63.3
2261 Male, age 18, unknown 62.0
2087 Female, age 72, unknown 50.5
2664 Male, age 75, both hemispheres 44.8
Ventral tegmental area
nTPM: 60.3
2410 Female, age 72, unknown 88.6
2223 Female, age 72, unknown 68.2
1915 Female, age 42, unknown 54.8
2218 Male, age 76, both hemispheres 54.6
1942 Male, age 51, unknown 49.8
2021 Male, age 53, unknown 46.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 86.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 86.1
Samples: 183

Max nTPM: 339.8
Min nTPM: 24.3
Std nTPM: 49.4
Median nTPM: 72.7
GTEX-ZZPT-0011-R2a-SM-GNTB1 50-59 years, male 339.8
GTEX-1LKK1-0011-R2b-SM-G8OLT 50-59 years, female 325.7
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 267.6
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 244.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 219.4
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 214.1
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 193.7
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 185.4
GTEX-1N2EF-0011-R2b-SM-F6482 60-69 years, male 179.4
GTEX-1R9K4-0011-R2b-SM-G8LLF 60-69 years, male 177.8
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 174.2
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 239.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 239.0
FF:10158-103A5 76 years, female 239.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 45.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 45.9
Samples: 4

Max nTPM: 66.6
Min nTPM: 31.9
Sample A Female 48.0
Sample B Female 31.9
Sample C Male 36.9
Sample D Male 66.6
Midbrain
nTPM: 42.6
Samples: 4

Max nTPM: 52.2
Min nTPM: 30.6
Sample A Female 52.2
Sample B Female 47.8
Sample C Male 30.6
Sample D Male 39.7
Periaqueductal gray
nTPM: 35.6
Samples: 3

Max nTPM: 41.9
Min nTPM: 28.2
Sample B Female 41.9
Sample C Male 28.2
Sample D Male 36.6
Superior colliculi
nTPM: 41.0
Samples: 4

Max nTPM: 50.3
Min nTPM: 26.5
Sample A Female 50.3
Sample B Female 26.5
Sample C Male 37.5
Sample D Male 49.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 23.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 23.5
Samples: 4

Max nTPM: 25.5
Min nTPM: 20.7
Sample A Male 25.2
Sample B Male 25.5
Sample C Female 20.7
Sample D Female 22.7

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 0.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.7
69443427 Antisense, RP_050414_04_A11, Mouse strain C57BL/6J (56 days, male) 0.7

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