MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:26.1 nTPM
HPA Brain:54.2 nTPM
GTEx:26.1 nTPM
FANTOM5:90.3 Scaled Tags Per Million
Pig:39.7 nTPM
Mouse:113.8 nTPM
Allen mouse:8.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 54.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 42.9
1870 Female, age 42, unknown 54.2
2411 Female, age 72, unknown 53.5
2019 Male, age 18, unknown 49.1
1830 Male, age 51, unknown 47.0
1833 Male, age 53, unknown 45.3
1827 Male, age 72, unknown 44.9
2219 Male, age 76, both hemispheres 42.0
2828 Female, age 72, unknown 34.6
2666 Male, age 74, left hemisphere 33.0
2586 Male, age 75, left hemisphere 25.8
Dorsal raphe nucleus
nTPM: 46.8
2298 Female, age 72, unknown 53.1
2750 Male, age 76, both hemispheres 51.2
1828 Male, age 53, unknown 46.1
2047 Male, age 72, unknown 44.4
2016 Female, age 72, unknown 39.2
Inferior colliculus
nTPM: 46.8
2097 Female, age 72, unknown 56.8
1848 Female, age 42, unknown 46.3
2849 Male, age 72, unknown 42.9
1890 Male, age 53, unknown 41.1
Median raphe nucleus
nTPM: 54.2
2220 Male, age 76, midline 54.2
Periaquaductal grey, anterior
nTPM: 44.8
1947 Male, age 18, unknown 50.8
2502 Female, age 75, unknown 47.1
1795 Male, age 51, unknown 36.6
Periaquaductal grey, dorsal
nTPM: 41.8
2850 Male, age 76, both hemispheres 46.7
1840 Male, age 53, unknown 42.6
1831 Male, age 72, unknown 38.9
2464 Female, age 72, unknown 38.9
Periaquaductal grey, lateral
nTPM: 43.3
2272 Male, age 74, both hemispheres 47.0
2140 Male, age 76, both hemispheres 41.8
2053 Male, age 18, unknown 41.0
Pretectal area
nTPM: 45.8
2007 Male, age 72, unknown 51.8
1817 Female, age 42, unknown 50.8
2273 Male, age 74, both hemispheres 50.7
1815 Male, age 53, unknown 48.5
1816 Male, age 51, unknown 48.5
2224 Female, age 72, unknown 47.5
1944 Female, age 72, unknown 45.9
2825 Male, age 18, unknown 43.5
2316 Male, age 76, right hemisphere 41.6
2667 Female, age 75, unknown 39.1
2407 Male, age 75, both hemispheres 36.0
Red nucleus
nTPM: 46.8
1821 Female, age 72, unknown 65.2
1865 Male, age 51, unknown 50.7
1954 Female, age 42, unknown 50.7
2503 Female, age 72, unknown 47.8
2823 Male, age 76, right hemisphere 47.6
1904 Male, age 53, unknown 47.2
2725 Female, age 75, unknown 47.1
2227 Male, age 72, unknown 45.4
2769 Male, age 72, unknown 44.6
2785 Male, age 18, unknown 44.6
2588 Male, age 74, left hemisphere 38.8
2584 Male, age 75, left hemisphere 32.4
Substantia nigra
nTPM: 46.0
1889 Female, age 72, unknown 56.4
2409 Female, age 72, unknown 54.5
2241 Male, age 72, unknown 53.3
1941 Male, age 53, unknown 52.4
1916 Female, age 42, unknown 47.3
1851 Male, age 51, unknown 44.3
2590 Female, age 75, unknown 44.2
2699 Male, age 18, unknown 37.3
2665 Male, age 74, both hemispheres 36.1
2583 Male, age 75, right hemisphere 34.5
Superior colliculus
nTPM: 44.8
2587 Male, age 74, left hemisphere 55.6
1895 Male, age 76, right hemisphere 51.4
2668 Female, age 75, unknown 49.0
1913 Female, age 42, unknown 47.0
1839 Male, age 51, unknown 46.6
2261 Male, age 18, unknown 45.9
1796 Male, age 53, unknown 42.6
2087 Female, age 72, unknown 41.5
1995 Male, age 72, unknown 39.8
2664 Male, age 75, both hemispheres 28.9
Ventral tegmental area
nTPM: 46.8
2223 Female, age 72, unknown 56.2
2410 Female, age 72, unknown 51.4
2218 Male, age 76, both hemispheres 48.2
1915 Female, age 42, unknown 43.2
1942 Male, age 51, unknown 42.0
2021 Male, age 53, unknown 39.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 26.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 26.1
Samples: 183

Max nTPM: 52.7
Min nTPM: 13.7
Std nTPM: 7.6
Median nTPM: 24.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 52.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 52.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 49.4
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 47.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 45.0
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 44.5
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 43.7
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 42.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 42.0
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 41.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 40.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 90.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 90.3
FF:10158-103A5 76 years, female 90.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 39.7
Pig sample Sample description nTPM
Substantia nigra
nTPM: 32.0
Samples: 4

Max nTPM: 43.5
Min nTPM: 24.1
Sample A Female 43.5
Sample B Female 28.0
Sample C Male 32.4
Sample D Male 24.1
Midbrain
nTPM: 39.7
Samples: 4

Max nTPM: 46.3
Min nTPM: 33.7
Sample A Female 36.8
Sample B Female 33.7
Sample C Male 46.3
Sample D Male 42.0
Periaqueductal gray
nTPM: 28.2
Samples: 3

Max nTPM: 31.6
Min nTPM: 24.4
Sample B Female 24.4
Sample C Male 31.6
Sample D Male 28.7
Superior colliculi
nTPM: 38.8
Samples: 4

Max nTPM: 47.5
Min nTPM: 27.1
Sample A Female 42.4
Sample B Female 27.1
Sample C Male 47.5
Sample D Male 38.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 113.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 113.9
Samples: 4

Max nTPM: 118.9
Min nTPM: 109.4
Sample A Male 109.4
Sample B Male 116.3
Sample C Female 118.9
Sample D Female 110.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 8.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.8
68563056 Antisense, RP_050125_01_A08, Mouse strain C57BL/6J (56 days, male) 8.8

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