MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:77.9 nTPM
HPA Brain:55.7 nTPM
GTEx:77.9 nTPM
FANTOM5:93.3 Scaled Tags Per Million
Pig:128.6 nTPM
Mouse:5.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 55.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 48.4
2586 Male, age 75, left hemisphere 79.9
1870 Female, age 42, unknown 57.1
2666 Male, age 74, left hemisphere 50.7
2828 Female, age 72, unknown 47.9
1833 Male, age 53, unknown 47.4
1830 Male, age 51, unknown 46.2
2019 Male, age 18, unknown 43.6
2219 Male, age 76, both hemispheres 38.3
2411 Female, age 72, unknown 36.7
1827 Male, age 72, unknown 36.1
Dorsal raphe nucleus
nTPM: 44.6
2016 Female, age 72, unknown 47.7
1828 Male, age 53, unknown 46.7
2047 Male, age 72, unknown 46.1
2750 Male, age 76, both hemispheres 43.5
2298 Female, age 72, unknown 38.8
Inferior colliculus
nTPM: 39.8
2849 Male, age 72, unknown 46.2
1890 Male, age 53, unknown 44.6
1848 Female, age 42, unknown 37.7
2097 Female, age 72, unknown 30.9
Median raphe nucleus
nTPM: 45.5
2220 Male, age 76, midline 45.5
Periaquaductal grey, anterior
nTPM: 47.9
2502 Female, age 75, unknown 55.6
1947 Male, age 18, unknown 45.1
1795 Male, age 51, unknown 43.1
Periaquaductal grey, dorsal
nTPM: 39.4
2850 Male, age 76, both hemispheres 52.0
1831 Male, age 72, unknown 37.6
1840 Male, age 53, unknown 36.0
2464 Female, age 72, unknown 32.1
Periaquaductal grey, lateral
nTPM: 44.3
2053 Male, age 18, unknown 47.5
2140 Male, age 76, both hemispheres 44.1
2272 Male, age 74, both hemispheres 41.4
Pretectal area
nTPM: 45.1
1944 Female, age 72, unknown 52.9
2407 Male, age 75, both hemispheres 52.8
2007 Male, age 72, unknown 52.1
1817 Female, age 42, unknown 51.8
1815 Male, age 53, unknown 46.2
1816 Male, age 51, unknown 44.0
2667 Female, age 75, unknown 43.8
2224 Female, age 72, unknown 42.6
2825 Male, age 18, unknown 40.8
2273 Male, age 74, both hemispheres 38.5
2316 Male, age 76, right hemisphere 30.8
Red nucleus
nTPM: 51.3
2584 Male, age 75, left hemisphere 67.0
1865 Male, age 51, unknown 60.5
1904 Male, age 53, unknown 56.5
2588 Male, age 74, left hemisphere 53.9
2227 Male, age 72, unknown 51.6
2785 Male, age 18, unknown 51.6
2769 Male, age 72, unknown 50.4
2503 Female, age 72, unknown 49.8
2823 Male, age 76, right hemisphere 49.2
1821 Female, age 72, unknown 46.9
1954 Female, age 42, unknown 39.7
2725 Female, age 75, unknown 38.0
Substantia nigra
nTPM: 55.7
1916 Female, age 42, unknown 68.1
2409 Female, age 72, unknown 64.0
2583 Male, age 75, right hemisphere 62.4
2699 Male, age 18, unknown 59.7
1851 Male, age 51, unknown 59.5
2665 Male, age 74, both hemispheres 54.8
2590 Female, age 75, unknown 49.7
2241 Male, age 72, unknown 48.7
1941 Male, age 53, unknown 45.5
1889 Female, age 72, unknown 44.5
Superior colliculus
nTPM: 45.1
2668 Female, age 75, unknown 57.4
1913 Female, age 42, unknown 53.3
2664 Male, age 75, both hemispheres 52.4
1995 Male, age 72, unknown 47.2
2261 Male, age 18, unknown 46.9
2587 Male, age 74, left hemisphere 43.4
1796 Male, age 53, unknown 39.5
1895 Male, age 76, right hemisphere 38.3
1839 Male, age 51, unknown 36.4
2087 Female, age 72, unknown 35.6
Ventral tegmental area
nTPM: 50.0
1942 Male, age 51, unknown 54.0
2021 Male, age 53, unknown 52.8
1915 Female, age 42, unknown 52.5
2410 Female, age 72, unknown 49.8
2218 Male, age 76, both hemispheres 45.9
2223 Female, age 72, unknown 44.7

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 77.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 77.9
Samples: 183

Max nTPM: 157.5
Min nTPM: 6.4
Std nTPM: 25.1
Median nTPM: 77.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 157.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 151.2
GTEX-1N5O9-0011-R2a-SM-G8LM1 60-69 years, male 147.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 144.0
GTEX-1HBPH-0011-R2a-SM-GQ1DS 40-49 years, female 142.1
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 139.8
GTEX-1O9I2-0011-R2b-SM-F3K53 50-59 years, male 137.2
GTEX-1PWST-0011-R2b-SM-F3K5I 70-79 years, male 136.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 132.5
GTEX-1I19N-0011-R2b-SM-GPRYG 70-79 years, male 131.0
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 125.3
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 93.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 93.3
FF:10158-103A5 76 years, female 93.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 128.6
Pig sample Sample description nTPM
Substantia nigra
nTPM: 128.6
Samples: 4

Max nTPM: 165.3
Min nTPM: 100.4
Sample A Female 165.3
Sample B Female 111.3
Sample C Male 137.3
Sample D Male 100.4
Midbrain
nTPM: 118.7
Samples: 4

Max nTPM: 137.9
Min nTPM: 103.4
Sample A Female 137.9
Sample B Female 122.3
Sample C Male 111.0
Sample D Male 103.4
Periaqueductal gray
nTPM: 99.8
Samples: 3

Max nTPM: 117.0
Min nTPM: 88.4
Sample B Female 94.1
Sample C Male 117.0
Sample D Male 88.4
Superior colliculi
nTPM: 121.4
Samples: 4

Max nTPM: 154.3
Min nTPM: 105.9
Sample A Female 154.3
Sample B Female 105.9
Sample C Male 112.0
Sample D Male 113.2

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 5.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 5.8
Samples: 4

Max nTPM: 6.0
Min nTPM: 5.5
Sample A Male 5.9
Sample B Male 6.0
Sample C Female 5.5
Sample D Female 5.7

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