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RPL27A
HPA
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  • RPL27A
TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
Tissue methods
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Bowman's capsule: Medium
Cells in glomeruli: Medium
Collecting ducts: Medium
Distal tubules: Medium
Proximal tubules (cell body): Low
Proximal tubules (microvilli): Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:1717.3 nTPM
HPA:582.9 nTPM
GTEx:1717.3 nTPM
FANTOM5:59.1 Scaled Tags Per Million
KIDNEY - SINGLE CELL RNA EXPRESSION
Explore single cell type data

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA060776Antibody HPA063379
Bowman's capsule -Medium
Cells in glomeruli Not detectedMedium
Cells in tubules Low-
Collecting ducts -Medium
Distal tubules -Medium
Proximal tubules (cell body) -Low
Proximal tubules (microvilli) -Not detected




KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.

Average nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

582.9
overview
Female, age 58
Kidney sample 55
nTPM: 490
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 607.4
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 613.9
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 804.5
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 576
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 511.1
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 935.5
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 173.8
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 534.2
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

1717.3
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 1436.0
Samples: 104

Max nTPM: 3027.6
Min nTPM: 744.7
Std nTPM: 429.9
Median nTPM: 1348.1
GTEX-15DCD-1926-SM-HAV33 70-79 years, female 3027.6
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 2948.6
GTEX-WL46-1926-SM-GNIN6 50-59 years, male 2401.1
GTEX-1O9I2-1926-SM-F2TBQ 50-59 years, male 2312.0
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 2289.5
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 2256.9
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 2200.9
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 2182.3
GTEX-1JJE9-1026-SM-HL9TH 70-79 years, male 2142.8
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 2120.0
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 2040.1
GTEX-1LH75-1326-SM-F2I1R 50-59 years, female 2027.8
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 2004.9
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 1982.0
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 1940.7
GTEX-16XZY-1026-SM-HAV39 70-79 years, male 1878.4
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 1771.7
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 1764.4
GTEX-1117F-2126-SM-GIN9G 60-69 years, female 1731.7
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 1731.6
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 1722.1
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 1696.3
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 1686.4
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 1664.3
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 1650.7
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 1628.1
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 1615.5
GTEX-1RQEC-2426-SM-F2I1J 60-69 years, male 1589.7
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 1581.1
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 1577.7
GTEX-13112-2126-SM-5GCO4 50-59 years, male 1567.1
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 1561.8
GTEX-1ICLY-2026-SM-GA913 50-59 years, male 1511.7
GTEX-14PJ2-1826-SM-HL9UB 50-59 years, male 1510.5
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 1493.2
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 1486.2
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 1484.0
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 1482.5
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 1480.7
GTEX-ZXG5-2026-SM-HAUZV 60-69 years, male 1477.3
GTEX-16XZZ-2226-SM-HAV34 60-69 years, male 1467.8
GTEX-O5YV-1226-SM-EV795 60-69 years, female 1466.4
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 1435.0
GTEX-1HCVE-2126-SM-HL9UO 50-59 years, male 1430.8
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 1427.2
GTEX-14JG1-2326-SM-HAUZ5 40-49 years, male 1407.1
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 1390.4
GTEX-W5X1-1626-SM-H7OGO 40-49 years, female 1386.5
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 1368.7
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 1362.5
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 1356.5
GTEX-13FHP-2126-SM-GIN8J 50-59 years, male 1350.9
GTEX-14C39-2126-SM-664OH 40-49 years, male 1345.4
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 1344.7
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 1335.5
GTEX-QDVN-1726-SM-HL9TO 50-59 years, male 1326.5
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 1319.7
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 1306.9
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 1305.6
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 1297.5
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 1293.8
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 1282.3
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 1279.2
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 1279.0
GTEX-1QAET-2126-SM-F2TBS 50-59 years, male 1265.6
GTEX-NFK9-1826-SM-HL9T3 40-49 years, male 1237.5
GTEX-16Z82-2826-SM-HAUZZ 60-69 years, male 1236.2
GTEX-13O3O-1726-SM-GJ3RL 60-69 years, female 1215.9
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 1211.8
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 1203.7
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 1202.1
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 1192.7
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 1192.6
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 1192.5
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 1184.8
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 1183.2
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 1179.5
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 1174.3
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 1159.1
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 1151.2
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 1128.2
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 1123.6
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 1120.7
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 1106.4
GTEX-12696-0926-SM-5FQTV 60-69 years, male 1089.4
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 1072.9
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 1070.5
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 1045.0
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 1007.3
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 997.8
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 982.3
GTEX-RN64-1626-SM-48FD7 50-59 years, male 953.4
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 941.5
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 941.5
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 928.7
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 928.2
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 917.5
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 906.6
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 903.7
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 894.3
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 875.5
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 864.1
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 829.0
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 744.7
Show allShow less
Kidney - Medulla
Average nTPM: 1717.3
Samples: 11

Max nTPM: 3898.5
Min nTPM: 798.0
Std nTPM: 946.9
Median nTPM: 1489.7
GTEX-N7MS-1526-SM-HAUZP 60-69 years, male 3898.5
GTEX-QEG5-2026-SM-H6Q6I 20-29 years, male 3402.0
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 1592.7
GTEX-T6MN-1926-SM-GOQYD 50-59 years, male 1544.0
GTEX-SIU8-1926-SM-H7OG4 50-59 years, male 1519.5
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 1489.7
GTEX-QEG4-1526-SM-GPRWK 30-39 years, male 1304.4
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 1224.8
GTEX-P4QS-1226-SM-HPAG8 60-69 years, male 1102.4
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 1013.9
GTEX-S33H-1526-SM-GQ1CB 30-39 years, male 798.0
Show allShow less

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

59.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 59.1
FF:10017-101C8 60,62,63 years, female 59.1

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