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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:134.3 nTPM
HPA Brain:65.9 nTPM
GTEx:134.3 nTPM
FANTOM5:171.0 Scaled Tags Per Million
Pig:59.8 nTPM
Mouse:95.9 nTPM
Allen mouse:4.6 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

65.9
Sample id Sample description nTPM
Amygdala
nTPM: 65.9
1987 Female, age 91, left hemisphere 81.1
2814 Male, age 76, right hemisphere 67.7
2514 Male, age 75, right hemisphere 63.4
2695 Female, age 67, right hemisphere 59.0
2517 Female, age 94, left hemisphere 58.5
Basal amygdala
nTPM: 50.8
2609 Male, age 75, right hemisphere 63.8
2243 Female, age 91, right hemisphere 59.3
1955 Male, age 76, both hemispheres 57.6
2110 Male, age 80, left hemisphere 56.9
2685 Female, age 94, left hemisphere 43.4
2827 Female, age 67, right hemisphere 24.1
Central amygdala
nTPM: 59.7
2515 Male, age 75, right hemisphere 73.7
2701 Female, age 91, right hemisphere 63.8
2239 Male, age 80, left hemisphere 58.8
1905 Male, age 76, both hemispheres 57.7
2826 Female, age 94, left hemisphere 44.6
Corticomedial amygdala
nTPM: 57.8
2242 Female, age 91, right hemisphere 72.0
2240 Male, age 76, both hemispheres 68.7
2428 Male, age 75, right hemisphere 66.7
2829 Male, age 80, left hemisphere 61.9
2429 Female, age 94, left hemisphere 50.7
2535 Female, age 67, right hemisphere 26.9
Lateral amygdala
nTPM: 45.9
1883 Male, age 76, both hemispheres 58.5
2516 Male, age 75, right hemisphere 54.0
2256 Male, age 80, left hemisphere 50.2
2255 Female, age 91, right hemisphere 44.6
2534 Female, age 94, left hemisphere 43.2
2830 Female, age 67, right hemisphere 24.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

134.3
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 134.3
Samples: 181

Max nTPM: 300.8
Min nTPM: 51.0
Std nTPM: 42.8
Median nTPM: 125.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 300.8
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 291.1
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 276.8
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 253.7
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 253.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 241.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 239.7
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 229.9
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 222.3
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 220.3
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 214.2
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 211.6
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 210.6
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 210.5
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 206.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 203.1
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 200.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 198.0
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 195.2
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 188.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 186.6
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 183.8
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 180.5
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 179.2
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 178.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 171.5
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 171.0
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 166.9
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 166.9
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 165.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 164.7
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 164.5
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 163.4
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 161.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 160.8
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 159.3
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 156.5
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 156.2
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 154.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 153.9
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 153.7
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 153.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 152.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 152.2
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 151.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 150.9
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 150.0
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 149.8
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 148.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 148.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 146.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 146.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 146.6
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 146.3
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 146.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 146.1
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 145.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 145.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 144.2
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 143.6
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 141.2
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 139.1
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 138.4
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 137.5
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 137.4
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 137.3
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 135.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 135.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 134.5
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 134.1
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 132.9
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 132.2
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 131.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 130.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 130.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 130.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 129.9
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 129.7
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 129.6
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 128.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 128.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 128.3
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 128.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 127.9
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 126.8
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 125.7
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 125.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 125.6
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 125.3
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 125.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 125.1
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 124.7
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 124.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 124.2
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 123.9
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 123.7
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 123.5
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 123.2
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 122.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 122.6
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 122.4
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 121.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 121.8
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 121.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 120.9
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 120.2
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 120.1
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 120.0
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 119.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 119.0
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 118.7
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 118.3
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 117.9
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 117.8
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 117.7
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 117.4
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 116.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 116.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 116.5
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 116.3
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 116.3
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 116.1
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 115.1
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 114.0
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 113.2
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 112.9
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 112.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 111.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 111.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 111.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 110.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 109.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 109.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 109.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 108.4
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 106.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 106.5
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 106.3
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 105.8
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 104.9
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 104.5
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 104.3
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 103.1
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 102.9
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 102.2
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 102.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 101.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 100.6
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 100.4
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 100.3
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 99.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 98.6
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 97.9
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 97.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 96.6
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 95.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 95.2
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 94.4
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 92.8
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 92.6
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 91.9
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 91.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 90.4
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 90.3
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 90.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 89.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 88.4
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 87.3
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 84.0
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 82.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 80.9
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 80.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 79.2
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 77.4
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 76.5
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 74.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 71.8
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 68.6
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 66.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 65.2
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 51.0
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

171.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 171.0
FF:10151-102I7 76 years, female 171.0

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.8
Pig sample Sample description nTPM
Amygdala
nTPM: 59.8
Samples: 4

Max nTPM: 71.5
Min nTPM: 49.7
Sample A Female 71.5
Sample B Female 59.4
Sample C Male 58.7
Sample D Male 49.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

95.9
Mouse sample Sample description nTPM
Amygdala
nTPM: 95.9
Samples: 4

Max nTPM: 104.3
Min nTPM: 91.1
Sample A Male 91.1
Sample B Male 96.9
Sample C Female 104.3
Sample D Female 91.4

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

4.6
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 4.6
385777 Antisense, RP_040625_01_E05, Mouse strain C57BL/6J (56 days, male) 4.6

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