MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:193.6 nTPM
HPA Brain:109.6 nTPM
GTEx:193.6 nTPM
FANTOM5:232.8 Scaled Tags Per Million
Pig:115.9 nTPM
Mouse:139.9 nTPM
Allen mouse:3.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 109.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 63.8
1870 Female, age 42, unknown 88.7
1833 Male, age 53, unknown 73.6
2411 Female, age 72, unknown 73.3
1830 Male, age 51, unknown 66.9
2219 Male, age 76, both hemispheres 61.1
2828 Female, age 72, unknown 60.5
2586 Male, age 75, left hemisphere 60.0
2019 Male, age 18, unknown 58.2
1827 Male, age 72, unknown 56.9
2666 Male, age 74, left hemisphere 39.1
Dorsal raphe nucleus
nTPM: 76.6
2298 Female, age 72, unknown 86.3
2750 Male, age 76, both hemispheres 78.0
2047 Male, age 72, unknown 77.7
2016 Female, age 72, unknown 71.3
1828 Male, age 53, unknown 70.0
Inferior colliculus
nTPM: 60.0
2097 Female, age 72, unknown 67.1
1890 Male, age 53, unknown 59.6
2849 Male, age 72, unknown 57.7
1848 Female, age 42, unknown 55.5
Median raphe nucleus
nTPM: 109.6
2220 Male, age 76, midline 109.6
Periaquaductal grey, anterior
nTPM: 59.1
1947 Male, age 18, unknown 62.4
1795 Male, age 51, unknown 58.3
2502 Female, age 75, unknown 56.6
Periaquaductal grey, dorsal
nTPM: 66.2
2850 Male, age 76, both hemispheres 91.2
1840 Male, age 53, unknown 63.3
2464 Female, age 72, unknown 55.3
1831 Male, age 72, unknown 54.8
Periaquaductal grey, lateral
nTPM: 68.6
2140 Male, age 76, both hemispheres 69.9
2272 Male, age 74, both hemispheres 68.5
2053 Male, age 18, unknown 67.4
Pretectal area
nTPM: 67.8
2273 Male, age 74, both hemispheres 90.9
2667 Female, age 75, unknown 82.7
2224 Female, age 72, unknown 78.4
1944 Female, age 72, unknown 70.0
1815 Male, age 53, unknown 67.5
2825 Male, age 18, unknown 63.9
1816 Male, age 51, unknown 62.8
1817 Female, age 42, unknown 62.3
2316 Male, age 76, right hemisphere 57.8
2407 Male, age 75, both hemispheres 57.7
2007 Male, age 72, unknown 52.1
Red nucleus
nTPM: 70.9
1821 Female, age 72, unknown 87.0
1904 Male, age 53, unknown 84.8
1954 Female, age 42, unknown 79.6
1865 Male, age 51, unknown 78.4
2725 Female, age 75, unknown 76.4
2503 Female, age 72, unknown 71.5
2823 Male, age 76, right hemisphere 71.4
2227 Male, age 72, unknown 69.6
2769 Male, age 72, unknown 66.7
2785 Male, age 18, unknown 61.9
2584 Male, age 75, left hemisphere 61.4
2588 Male, age 74, left hemisphere 41.6
Substantia nigra
nTPM: 85.8
2241 Male, age 72, unknown 132.4
1916 Female, age 42, unknown 116.7
2699 Male, age 18, unknown 97.0
1851 Male, age 51, unknown 95.0
2409 Female, age 72, unknown 90.6
1941 Male, age 53, unknown 80.0
1889 Female, age 72, unknown 79.0
2590 Female, age 75, unknown 67.6
2583 Male, age 75, right hemisphere 54.5
2665 Male, age 74, both hemispheres 45.0
Superior colliculus
nTPM: 60.7
2587 Male, age 74, left hemisphere 81.7
1913 Female, age 42, unknown 74.1
1995 Male, age 72, unknown 65.8
2261 Male, age 18, unknown 61.7
2087 Female, age 72, unknown 61.0
1796 Male, age 53, unknown 59.8
2668 Female, age 75, unknown 55.9
2664 Male, age 75, both hemispheres 51.5
1839 Male, age 51, unknown 47.9
1895 Male, age 76, right hemisphere 47.6
Ventral tegmental area
nTPM: 85.6
2223 Female, age 72, unknown 94.3
1915 Female, age 42, unknown 90.5
2410 Female, age 72, unknown 90.2
2218 Male, age 76, both hemispheres 88.1
1942 Male, age 51, unknown 82.3
2021 Male, age 53, unknown 68.0

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 193.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 193.6
Samples: 183

Max nTPM: 429.3
Min nTPM: 85.2
Std nTPM: 60.7
Median nTPM: 184.1
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 429.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 405.1
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 391.9
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 387.1
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 366.5
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 366.4
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 332.2
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 330.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 327.5
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 325.1
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 320.8
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 232.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 232.8
FF:10158-103A5 76 years, female 232.8

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 115.9
Pig sample Sample description nTPM
Substantia nigra
nTPM: 106.7
Samples: 4

Max nTPM: 129.0
Min nTPM: 72.4
Sample A Female 129.0
Sample B Female 72.4
Sample C Male 119.2
Sample D Male 106.0
Midbrain
nTPM: 115.9
Samples: 4

Max nTPM: 190.8
Min nTPM: 71.6
Sample A Female 190.8
Sample B Female 86.2
Sample C Male 114.9
Sample D Male 71.6
Periaqueductal gray
nTPM: 75.3
Samples: 3

Max nTPM: 82.9
Min nTPM: 65.4
Sample B Female 65.4
Sample C Male 82.9
Sample D Male 77.6
Superior colliculi
nTPM: 94.3
Samples: 4

Max nTPM: 118.3
Min nTPM: 61.9
Sample A Female 96.7
Sample B Female 61.9
Sample C Male 118.3
Sample D Male 100.4

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 139.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 139.9
Samples: 4

Max nTPM: 157.3
Min nTPM: 123.0
Sample A Male 157.3
Sample B Male 131.5
Sample C Female 123.0
Sample D Female 147.9

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 3.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 3.8
385777 Antisense, RP_040625_01_E05, Mouse strain C57BL/6J (56 days, male) 3.8

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