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SEC11C
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  • TISSUE

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  • SEC11C
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BLOOD VESSEL BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON
DUODENUM ENDOMETRIUM EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MIDBRAIN
NASOPHARYNX ORAL MUCOSA OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN
SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
Tissue methods
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

GTEx:130.6 nTPM
FANTOM5:204.5 Scaled Tags Per Million
Pig:61.9 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells. Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Ascending and descending describe two types of gradient, based on difference in staining intensity between enterocytes in crypts and apical enterocytes.

Ascending - the staining intensity is stronger in apical enterocytes (towards the lumen) compared to enterocytes in the crypts (gland based)

Descending - the staining is weaker in apical enterocytes compared to enterocytes in crypts

Antibody HPA026816
Glial cells Not detected
Neuronal cells Not detected



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

130.6
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 130.6
Samples: 300

Max nTPM: 277.2
Min nTPM: 78.3
Std nTPM: 32.0
Median nTPM: 123.9
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 277.2
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 253.4
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 248.8
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 235.4
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 227.0
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 224.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 219.6
GTEX-1LH75-0011-R5b-SM-F2TAO 50-59 years, female 218.0
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 216.4
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 206.7
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 203.9
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 203.6
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 201.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 198.8
GTEX-1PWST-0011-R5a-SM-F648V 70-79 years, male 197.4
GTEX-13QJC-0011-R5a-SM-GJ3QH 60-69 years, female 197.1
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 195.5
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 195.2
GTEX-1POEN-0011-R5b-SM-F2T9Z 30-39 years, female 191.6
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 191.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 187.6
GTEX-ZYY3-0011-R5a-SM-H7OGH 60-69 years, female 185.9
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 185.4
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 185.4
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 184.1
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 183.0
GTEX-1JMQK-0011-R5a-SM-G8LKV 60-69 years, male 178.2
GTEX-1MJK2-0011-R5b-SM-F3427 50-59 years, male 176.7
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 176.6
GTEX-1LVA9-0011-R5a-SM-F6492 50-59 years, male 174.0
GTEX-15DDE-0011-R5b-SM-7KULJ 50-59 years, female 172.9
GTEX-1MA7X-0011-R5a-SM-F341K 60-69 years, male 171.6
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 167.5
GTEX-13N2G-0011-R5a-SM-5MR33 60-69 years, male 167.1
GTEX-14C5O-0011-R5a-SM-G8W84 60-69 years, male 166.6
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 165.6
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 164.9
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 160.6
GTEX-11ZUS-0011-R5b-SM-GIN9I 30-39 years, male 160.5
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 160.0
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 159.9
GTEX-1JMQL-0011-R5a-SM-F3424 50-59 years, female 159.4
GTEX-1LB8K-0011-R5b-SM-G8OKO 50-59 years, male 158.5
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 157.5
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 156.1
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 156.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 156.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 155.9
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 155.8
GTEX-11EI6-0011-R5a-SM-GINAM 60-69 years, male 155.0
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 154.8
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 154.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 154.4
GTEX-11TUW-0011-R5b-SM-5BC6Q 60-69 years, male 153.8
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 153.7
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 152.8
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 150.9
GTEX-1NV8Z-0011-R5a-SM-G8LKX 60-69 years, male 150.2
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 150.1
GTEX-ZZPT-0011-R5a-SM-GPRX5 50-59 years, male 149.8
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 149.7
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 149.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 149.4
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 149.2
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 148.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 146.9
GTEX-1N5O9-0011-R5a-SM-F3K46 60-69 years, male 146.7
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 146.6
GTEX-1MCQQ-0011-R5b-SM-GJ3RW 60-69 years, male 145.9
GTEX-1RQEC-0011-R5a-SM-F2TBK 60-69 years, male 144.9
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 144.8
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 144.5
GTEX-1OJC4-0011-R5b-SM-F3K55 50-59 years, female 144.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 143.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 143.2
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 142.9
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 142.9
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 142.2
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 141.8
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 141.7
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 140.9
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 140.9
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 140.8
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 140.0
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 139.6
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 139.6
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 139.5
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 139.5
GTEX-1192W-0011-R5a-SM-GI4VY 60-69 years, male 139.4
GTEX-16GPK-0011-R5b-SM-GRR3C 60-69 years, male 139.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 139.2
GTEX-1JMLX-0011-R5b-SM-EY5YK 50-59 years, male 138.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 138.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 137.9
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 137.8
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 137.5
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 137.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 136.7
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 136.6
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 135.8
GTEX-1QP6S-0011-R5a-SM-F648S 40-49 years, male 135.6
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 135.1
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 135.1
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 135.0
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 134.9
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 134.6
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 134.3
GTEX-ZAJG-0011-R5a-SM-GRR1S 50-59 years, female 134.3
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 134.1
GTEX-1JMOU-0011-R5b-SM-EY5ZM 60-69 years, female 134.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 133.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 133.2
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 132.9
GTEX-1CB4J-0011-R5a-SM-9WG5Y 60-69 years, male 132.6
GTEX-1RQED-0011-R5b-SM-F3K56 60-69 years, male 132.6
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 132.4
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 132.2
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 132.1
GTEX-1ICLZ-0011-R5a-SM-CMKHM 60-69 years, male 132.1
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 132.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 131.6
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 131.2
GTEX-111FC-0011-R5a-SM-GIN8L 60-69 years, male 130.6
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 130.4
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 128.7
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 128.5
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 127.9
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 127.7
GTEX-1A8G7-0011-R5a-SM-H7OH3 60-69 years, male 127.7
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 127.6
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 127.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 127.0
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 126.9
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 126.8
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 126.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 126.4
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 126.3
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 126.2
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 126.1
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 125.8
GTEX-12584-0011-R5b-SM-GIN96 40-49 years, male 125.3
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 125.3
GTEX-1JN6P-0011-R5b-SM-G9EPO 60-69 years, male 125.2
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 125.2
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 125.1
GTEX-1O9I2-0011-R5a-SM-F648P 50-59 years, male 124.8
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 124.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 124.3
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 123.9
GTEX-14E6C-0011-R5b-SM-G9ERG 40-49 years, male 123.9
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 123.9
GTEX-1KWVE-0011-R5a-SM-G8LLB 30-39 years, male 123.6
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 123.6
GTEX-1LSNL-0011-R5a-SM-F3K49 50-59 years, male 123.1
GTEX-1N2EE-0011-R5a-SM-EY5YF 60-69 years, male 123.0
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 122.9
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 122.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 122.8
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 122.7
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 122.4
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 122.4
GTEX-11GS4-0011-R5a-SM-GINAF 60-69 years, male 122.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 122.2
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 122.1
GTEX-11ZU8-0011-R5a-SM-GJ3PY 60-69 years, male 121.5
GTEX-1PIIG-0011-R5b-SM-F341S 30-39 years, male 121.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 121.4
GTEX-15RJE-0011-R5b-SM-H6Q7T 40-49 years, male 121.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 121.3
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 121.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 121.0
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 120.2
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 120.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 120.0
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 119.3
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 119.1
GTEX-1RLM8-0011-R5a-SM-F3K4P 50-59 years, male 118.8
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 118.7
GTEX-1LKK1-0011-R5b-SM-EY5YB 50-59 years, female 118.6
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 118.4
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 118.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 117.8
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 117.8
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 117.7
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 117.7
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 117.3
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 117.1
GTEX-ZAK1-0011-R5a-SM-GRR32 50-59 years, female 116.9
GTEX-15UF6-0011-R5a-SM-H7OFA 70-79 years, female 116.0
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 115.8
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 115.8
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 115.6
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 115.6
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 115.6
GTEX-1LVAO-0011-R5a-SM-EY5Y6 60-69 years, male 115.5
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 115.2
GTEX-11GSO-0011-R5b-SM-GJ3RA 60-69 years, male 114.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 114.5
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 113.7
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 113.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 113.1
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 113.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 112.6
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 112.4
GTEX-117XS-0011-R5b-SM-GJ3PP 60-69 years, male 112.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 112.0
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 111.9
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 111.4
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 111.2
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 110.7
GTEX-ZYFD-0011-R5a-SM-H6Q7M 50-59 years, male 110.2
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 109.9
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 109.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 109.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 109.4
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 109.4
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 109.2
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 109.2
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 108.8
GTEX-11EMC-0011-R5a-SM-GJ3PK 60-69 years, female 108.6
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 108.2
GTEX-1N2EF-0011-R5a-SM-F3K4Y 60-69 years, male 108.2
GTEX-UTHO-0011-R5A-SM-G8W6H 60-69 years, male 108.1
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 107.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 107.8
GTEX-1117F-0011-R5a-SM-GI4VW 60-69 years, female 107.7
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 107.3
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 107.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 107.0
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 107.0
GTEX-12126-0011-R5b-SM-GIN98 20-29 years, male 106.9
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 106.8
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 106.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 106.5
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 106.4
GTEX-1P4AB-0011-R5a-SM-F3K4I 50-59 years, male 106.0
GTEX-1PPGY-0011-R5a-SM-F33ZV 60-69 years, male 105.9
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 105.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 105.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 105.6
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 105.6
GTEX-1RAZS-0011-R5b-SM-F341U 50-59 years, male 105.3
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 105.0
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 104.6
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 104.5
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 104.4
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 104.1
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 104.1
GTEX-1QMI2-0011-R5b-SM-F3K4S 60-69 years, male 103.9
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 103.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 103.5
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 103.5
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 103.4
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 103.1
GTEX-1LSVX-0011-R3a-SM-EXURQ 60-69 years, male 102.8
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 102.5
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 102.5
GTEX-1KD4Q-0011-R5a-SM-EY5Y8 40-49 years, male 102.1
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 101.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 101.7
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 101.5
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 101.5
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 101.3
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 100.9
GTEX-1NV5F-0011-R5b-SM-F3K3I 60-69 years, female 100.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 100.4
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 99.5
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 99.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 99.2
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 98.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 98.6
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 98.4
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 98.3
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 97.8
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 97.1
GTEX-1QEPI-0011-R5b-SM-F649S 60-69 years, female 96.8
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 96.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 96.2
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 96.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 96.0
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 95.6
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 95.5
GTEX-1RDX4-0011-R5a-SM-F33ZH 50-59 years, female 95.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 94.8
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 94.7
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 93.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 92.1
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 91.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 89.8
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 88.9
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 87.7
GTEX-WHSE-0011-R5A-SM-3P5ZO 20-29 years, male 86.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 86.5
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 86.5
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 85.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 85.3
GTEX-1R46S-0011-R5b-SM-F342A 60-69 years, female 84.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 80.6
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 80.3
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 78.3
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

204.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 204.5
FF:10164-103B2 76 years, female 204.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

61.9
Pig sample Sample description nTPM
Caudate
nTPM: 61.9
Samples: 4

Max nTPM: 73.6
Min nTPM: 56.3
Sample A Female 59.6
Sample B Female 56.3
Sample C Male 73.6
Sample D Male 58.0

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