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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
Brain methods
AMYGDALA - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:144.6 nTPM
HPA Brain:76.1 nTPM
GTEx:144.6 nTPM
FANTOM5:76.7 Scaled Tags Per Million
Pig:48.4 nTPM
Mouse:23.4 nTPM
Allen mouse:1.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

AMYGDALA - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

76.1
Sample id Sample description nTPM
Amygdala
nTPM: 76.1
2514 Male, age 75, right hemisphere 83.1
2695 Female, age 67, right hemisphere 81.1
1987 Female, age 91, left hemisphere 73.3
2814 Male, age 76, right hemisphere 71.9
2517 Female, age 94, left hemisphere 70.9
Basal amygdala
nTPM: 62.6
2110 Male, age 80, left hemisphere 71.6
2609 Male, age 75, right hemisphere 70.1
1955 Male, age 76, both hemispheres 67.8
2685 Female, age 94, left hemisphere 59.7
2243 Female, age 91, right hemisphere 58.3
2827 Female, age 67, right hemisphere 48.1
Central amygdala
nTPM: 67.6
2826 Female, age 94, left hemisphere 74.4
2515 Male, age 75, right hemisphere 72.4
1905 Male, age 76, both hemispheres 71.5
2239 Male, age 80, left hemisphere 67.4
2701 Female, age 91, right hemisphere 52.3
Corticomedial amygdala
nTPM: 63.6
2428 Male, age 75, right hemisphere 74.1
2829 Male, age 80, left hemisphere 71.1
2240 Male, age 76, both hemispheres 64.4
2429 Female, age 94, left hemisphere 63.6
2242 Female, age 91, right hemisphere 57.9
2535 Female, age 67, right hemisphere 50.6
Lateral amygdala
nTPM: 67.6
2534 Female, age 94, left hemisphere 79.1
2516 Male, age 75, right hemisphere 76.3
1883 Male, age 76, both hemispheres 68.4
2830 Female, age 67, right hemisphere 64.8
2256 Male, age 80, left hemisphere 63.3
2255 Female, age 91, right hemisphere 53.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

144.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 144.6
Samples: 181

Max nTPM: 327.4
Min nTPM: 86.2
Std nTPM: 38.2
Median nTPM: 138.0
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 327.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 316.3
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 276.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 276.1
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 268.1
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 267.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 261.7
GTEX-11DYG-0011-R4b-SM-GJ3RG 60-69 years, male 246.9
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 228.6
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 213.6
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 205.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 203.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 195.4
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 190.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 185.0
GTEX-1JJ6O-0011-R4a-SM-EY5YM 60-69 years, male 183.3
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 179.7
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 179.5
GTEX-1LKK1-0011-R4b-SM-EY5YA 50-59 years, female 178.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 177.7
GTEX-11NV4-0011-R4a-SM-GI4XC 60-69 years, male 177.1
GTEX-1PWST-0011-R4a-SM-F2T9X 70-79 years, male 175.8
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 175.4
GTEX-1JMLX-0011-R4a-SM-EY5YJ 50-59 years, male 172.3
GTEX-1MJK2-0011-R4a-SM-F3426 50-59 years, male 171.9
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 171.7
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 169.0
GTEX-1RLM8-0011-R4a-SM-F2TBL 50-59 years, male 167.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 167.1
GTEX-11OF3-0011-R4a-SM-GJ3RB 60-69 years, male 165.9
GTEX-111FC-0011-R4a-SM-GIN8K 60-69 years, male 165.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 164.6
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 163.1
GTEX-1JN1M-0011-R4b-SM-F6494 60-69 years, female 163.1
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 162.1
GTEX-1NV8Z-0011-R4b-SM-G8LMZ 60-69 years, male 161.6
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 160.5
GTEX-11ZTS-0011-R4b-SM-GINAQ 60-69 years, female 160.4
GTEX-147F4-0011-R4b-SM-GJ3R4 50-59 years, male 160.2
GTEX-1JMQK-0011-R4a-SM-G8LLQ 60-69 years, male 160.0
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 159.8
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 158.8
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 156.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 156.1
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 155.7
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 155.7
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 155.0
GTEX-ZYY3-0011-R4a-SM-GQ1CY 60-69 years, female 153.5
GTEX-PVOW-0011-R4A-SM-H6Q8O 40-49 years, male 153.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 153.1
GTEX-11DXY-0011-R4b-SM-GI4VR 60-69 years, male 151.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 150.8
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 150.0
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 149.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 149.2
GTEX-1LVA9-0011-R4a-SM-F2TA2 50-59 years, male 148.8
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 147.9
GTEX-1RDX4-0011-R4b-SM-F3K43 50-59 years, female 147.6
GTEX-12WSC-0011-R4a-SM-H6Q8M 50-59 years, male 147.3
GTEX-11GSO-0011-R4b-SM-GJ3R8 60-69 years, male 146.9
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 146.8
GTEX-1OJC4-0011-R4a-SM-F3K54 50-59 years, female 146.8
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 146.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 145.5
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 144.9
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 144.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 144.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 144.1
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 144.0
GTEX-12ZZY-0011-R4a-SM-GIN9F 60-69 years, male 143.9
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 143.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 143.3
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 142.7
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 142.6
GTEX-1P4AB-0011-R4b-SM-F2T9S 50-59 years, male 142.4
GTEX-13FHO-0011-R4b-SM-H6611 60-69 years, male 142.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 142.2
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 142.1
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 141.9
GTEX-117XS-0011-R4b-SM-GJ3PR 60-69 years, male 141.7
GTEX-14C5O-0011-R4b-SM-G9ERF 60-69 years, male 140.7
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 140.7
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 140.3
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 140.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 139.5
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 139.4
GTEX-1POEN-0011-R4b-SM-F3K4O 30-39 years, female 139.0
GTEX-1RQEC-0011-R4b-SM-F342C 60-69 years, male 138.6
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 138.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 138.2
GTEX-14BMV-0011-R4a-SM-H6Q7P 50-59 years, male 138.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 137.9
GTEX-1RQED-0011-R4b-SM-F2I2X 60-69 years, male 137.8
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 137.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 137.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 137.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 137.5
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 137.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 137.0
GTEX-11GS4-0011-R4a-SM-GJ3RJ 60-69 years, male 135.6
GTEX-145LU-0011-R4b-SM-5P9K1 50-59 years, male 135.3
GTEX-1PPGY-0011-R4a-SM-F3K4F 60-69 years, male 134.8
GTEX-13PLJ-0011-R4b-SM-GJ3R6 60-69 years, female 134.4
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 134.4
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 134.3
GTEX-1O9I2-0011-R4b-SM-F3K4K 50-59 years, male 134.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 133.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 133.5
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 133.4
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 132.6
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 132.6
GTEX-1KWVE-0011-R4a-SM-F3K5X 30-39 years, male 132.4
GTEX-1LB8K-0011-R4b-SM-F6487 50-59 years, male 132.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 132.1
GTEX-1117F-0011-R4b-SM-GI4VM 60-69 years, female 131.6
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 131.3
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 131.1
GTEX-1QMI2-0011-R4b-SM-F3K4R 60-69 years, male 130.4
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 130.2
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 129.6
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 129.4
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 129.1
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 128.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 127.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 127.4
GTEX-1PIIG-0011-R4a-SM-F2TAQ 30-39 years, male 126.9
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 126.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 126.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 124.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 124.4
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 123.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 123.8
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 123.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 123.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 121.9
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 121.8
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 121.8
GTEX-ZZPT-0011-R4a-SM-GPRX4 50-59 years, male 121.5
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 118.9
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 118.8
GTEX-1JMOU-0011-R4b-SM-EY5ZL 60-69 years, female 118.8
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 118.7
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 118.6
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 118.2
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 117.7
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 116.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 116.0
GTEX-13QJC-0011-R4a-SM-H65ZP 60-69 years, female 115.8
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 115.6
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 115.3
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 115.2
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 115.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 114.8
GTEX-1R46S-0011-R4b-SM-F2TBF 60-69 years, female 114.8
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 114.5
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 114.2
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 114.1
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 113.7
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 113.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 112.4
GTEX-1QP6S-0011-R4b-SM-F33ZY 40-49 years, male 112.2
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 109.8
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 109.0
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 108.6
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 107.2
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 106.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 106.0
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 105.0
GTEX-15RJE-0011-R4a-SM-H7OH4 40-49 years, male 104.4
GTEX-1LH75-0011-R4a-SM-F2TAM 50-59 years, female 103.7
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 103.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 102.8
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 100.9
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 98.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 98.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 96.6
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 94.0
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 92.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 91.9
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 87.7
GTEX-1N2EF-0011-R4a-SM-F341F 60-69 years, male 86.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

76.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 76.7
FF:10151-102I7 76 years, female 76.7

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

48.4
Pig sample Sample description nTPM
Amygdala
nTPM: 48.4
Samples: 4

Max nTPM: 65.2
Min nTPM: 38.0
Sample A Female 65.2
Sample B Female 49.7
Sample C Male 38.0
Sample D Male 40.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

23.4
Mouse sample Sample description nTPM
Amygdala
nTPM: 23.4
Samples: 4

Max nTPM: 26.7
Min nTPM: 20.2
Sample A Male 20.2
Sample B Male 21.6
Sample C Female 26.7
Sample D Female 25.0

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Max subtype Expression energyi

Max subtype Expression energy is the value for the subtype with the largest average Expression energy across the subtype samples.

1.7
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 1.7
69838600 Antisense, RP_050310_02_B08, Mouse strain C57BL/6J (56 days, male) 3.2
74819685 Antisense, RP_060315_02_H01, Mouse strain C57BL/6J (56 days, male) 0.1

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