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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:171.5 nTPM
HPA Brain:94.2 nTPM
GTEx:171.5 nTPM
FANTOM5:84.2 Scaled Tags Per Million
Pig:77.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

94.2
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 88.0
1981 Female, age 72, midline 114.9
2565 Male, age 75, midline 89.9
2194 Female, age 79, both hemispheres 85.2
2816 Male, age 47, midline 75.5
2048 Male, age 55, midline 74.3
Cervical spinal cord, dorsal horn
nTPM: 94.2
2173 Female, age 72, unknown 136.6
2296 Male, age 66, both hemispheres 124.2
2069 Male, age 47, both hemispheres 101.6
2297 Male, age 75, both hemispheres 71.1
1877 Male, age 55, unknown 67.4
2721 Male, age 90, both hemispheres 64.3
Cervical spinal cord, ventral horn
nTPM: 93.9
2098 Female, age 72, unknown 117.8
2480 Male, age 75, both hemispheres 100.3
2809 Male, age 90, both hemispheres 97.9
2068 Male, age 55, unknown 92.0
2295 Male, age 66, both hemispheres 87.3
2820 Female, age 79, both hemispheres 68.2

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

171.5
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 171.5
Samples: 204

Max nTPM: 314.9
Min nTPM: 83.7
Std nTPM: 37.7
Median nTPM: 168.5
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 314.9
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 282.1
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 278.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 270.9
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 263.8
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 260.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 252.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 248.6
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 241.6
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 240.2
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 234.9
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 233.6
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 230.0
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 225.4
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 225.4
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 224.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 223.1
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 217.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 216.6
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 216.3
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 216.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 216.1
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 214.3
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 212.6
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 212.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 210.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 208.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 208.4
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 208.3
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 207.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 207.3
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 207.0
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 206.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 206.1
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 203.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 203.5
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 203.1
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 203.1
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 201.4
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 200.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 200.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 200.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 200.2
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 198.9
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 198.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 196.8
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 196.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 196.2
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 196.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 195.4
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 192.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 191.4
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 191.4
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 191.3
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 191.3
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 190.8
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 190.5
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 188.4
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 188.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 188.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 188.2
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 187.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 186.5
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 186.5
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 186.2
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 185.8
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 185.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 184.5
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 183.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 183.2
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 182.8
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 182.5
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 182.4
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 181.6
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 181.5
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 181.0
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 180.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 180.0
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 179.9
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 179.4
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 179.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 179.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 179.1
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 178.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 178.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 177.6
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 177.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 177.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 177.0
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 176.7
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 176.3
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 174.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 174.6
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 173.9
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 173.2
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 172.9
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 172.8
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 172.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 170.9
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 170.8
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 169.8
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 168.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 168.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 167.5
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 167.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 166.3
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 166.0
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 165.9
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 165.6
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 165.3
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 165.1
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 164.8
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 164.3
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 164.2
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 164.1
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 163.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 163.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 163.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 163.3
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 162.9
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 162.2
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 162.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 161.7
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 161.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 160.7
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 160.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 160.2
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 159.8
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 158.8
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 158.6
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 158.4
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 157.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 156.9
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 156.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 156.2
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 156.1
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 155.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 155.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 154.9
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 154.1
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 153.9
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 153.6
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 153.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 152.8
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 151.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 151.8
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 151.2
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 150.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 148.4
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 148.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 148.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 147.7
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 147.4
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 147.3
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 145.8
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 145.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 144.1
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 143.8
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 142.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 141.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 141.0
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 140.9
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 140.4
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 139.4
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 139.0
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 138.6
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 137.6
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 137.3
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 137.2
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 136.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 136.3
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 135.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 135.0
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 134.9
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 134.5
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 134.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 133.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 132.5
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 131.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 130.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 129.8
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 127.8
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 127.3
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 124.7
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 124.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 124.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 123.3
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 122.4
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 121.8
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 120.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 115.0
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 115.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 114.7
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 113.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 113.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 110.4
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 108.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 107.4
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 99.4
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 96.2
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 93.1
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 91.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 85.3
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 83.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

84.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 84.2
FF:10181-103D1 60 years, female 99.8
FF:10159-103A6 76 years, female 68.5

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

77.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 75.8
Samples: 4

Max nTPM: 93.4
Min nTPM: 67.3
Sample A Female 68.7
Sample B Female 73.6
Sample C Male 93.4
Sample D Male 67.3
Ventral spinal cord
nTPM: 77.8
Samples: 4

Max nTPM: 84.3
Min nTPM: 68.8
Sample A Female 68.8
Sample B Female 75.9
Sample C Male 82.3
Sample D Male 84.3

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