MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:134.7 nTPM
HPA Brain:189.4 nTPM
GTEx:134.7 nTPM
FANTOM5:305.6 Scaled Tags Per Million
Pig:130.2 nTPM
Mouse:278.8 nTPM
Allen mouse:16.7 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 189.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 130.1
1870 Female, age 42, unknown 171.4
2411 Female, age 72, unknown 153.9
1833 Male, age 53, unknown 144.5
1827 Male, age 72, unknown 139.7
2019 Male, age 18, unknown 138.3
1830 Male, age 51, unknown 132.4
2828 Female, age 72, unknown 119.3
2666 Male, age 74, left hemisphere 112.2
2219 Male, age 76, both hemispheres 102.4
2586 Male, age 75, left hemisphere 86.9
Dorsal raphe nucleus
nTPM: 159.3
2298 Female, age 72, unknown 192.4
1828 Male, age 53, unknown 155.9
2016 Female, age 72, unknown 155.1
2750 Male, age 76, both hemispheres 147.1
2047 Male, age 72, unknown 146.1
Inferior colliculus
nTPM: 132.3
2097 Female, age 72, unknown 138.6
2849 Male, age 72, unknown 132.9
1848 Female, age 42, unknown 130.4
1890 Male, age 53, unknown 127.5
Median raphe nucleus
nTPM: 189.4
2220 Male, age 76, midline 189.4
Periaquaductal grey, anterior
nTPM: 152.6
1947 Male, age 18, unknown 168.6
2502 Female, age 75, unknown 153.1
1795 Male, age 51, unknown 136.1
Periaquaductal grey, dorsal
nTPM: 153.5
2850 Male, age 76, both hemispheres 202.0
1840 Male, age 53, unknown 148.2
1831 Male, age 72, unknown 138.2
2464 Female, age 72, unknown 125.6
Periaquaductal grey, lateral
nTPM: 158.1
2272 Male, age 74, both hemispheres 177.0
2140 Male, age 76, both hemispheres 159.5
2053 Male, age 18, unknown 137.9
Pretectal area
nTPM: 150.3
2273 Male, age 74, both hemispheres 200.9
2224 Female, age 72, unknown 170.7
1815 Male, age 53, unknown 152.5
1817 Female, age 42, unknown 150.9
1816 Male, age 51, unknown 150.5
1944 Female, age 72, unknown 150.5
2667 Female, age 75, unknown 147.9
2825 Male, age 18, unknown 144.9
2407 Male, age 75, both hemispheres 141.4
2007 Male, age 72, unknown 139.6
2316 Male, age 76, right hemisphere 103.1
Red nucleus
nTPM: 145.8
2725 Female, age 75, unknown 178.7
1821 Female, age 72, unknown 169.1
1954 Female, age 42, unknown 163.4
2503 Female, age 72, unknown 162.2
1904 Male, age 53, unknown 153.3
1865 Male, age 51, unknown 150.7
2227 Male, age 72, unknown 136.0
2769 Male, age 72, unknown 133.0
2785 Male, age 18, unknown 132.8
2584 Male, age 75, left hemisphere 127.8
2588 Male, age 74, left hemisphere 125.6
2823 Male, age 76, right hemisphere 116.4
Substantia nigra
nTPM: 140.7
2241 Male, age 72, unknown 167.0
1916 Female, age 42, unknown 152.3
1851 Male, age 51, unknown 148.4
2409 Female, age 72, unknown 148.4
1889 Female, age 72, unknown 147.1
2699 Male, age 18, unknown 135.9
1941 Male, age 53, unknown 135.5
2590 Female, age 75, unknown 130.2
2665 Male, age 74, both hemispheres 121.7
2583 Male, age 75, right hemisphere 120.8
Superior colliculus
nTPM: 129.9
2587 Male, age 74, left hemisphere 160.4
1913 Female, age 42, unknown 148.9
1995 Male, age 72, unknown 143.0
2261 Male, age 18, unknown 140.4
2087 Female, age 72, unknown 133.8
1796 Male, age 53, unknown 129.3
1839 Male, age 51, unknown 126.1
1895 Male, age 76, right hemisphere 114.4
2668 Female, age 75, unknown 111.5
2664 Male, age 75, both hemispheres 91.7
Ventral tegmental area
nTPM: 144.9
2223 Female, age 72, unknown 164.7
1915 Female, age 42, unknown 147.0
2410 Female, age 72, unknown 143.9
2218 Male, age 76, both hemispheres 142.2
1942 Male, age 51, unknown 142.0
2021 Male, age 53, unknown 129.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 134.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 134.7
Samples: 183

Max nTPM: 583.6
Min nTPM: 45.1
Std nTPM: 69.0
Median nTPM: 118.3
GTEX-1JN1M-0011-R2b-SM-G9EPE 60-69 years, female 583.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 411.4
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 405.2
GTEX-15G19-0011-R2b-SM-H6Q7S 60-69 years, male 375.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 356.2
GTEX-ZAJG-0011-R2a-SM-GNTAX 50-59 years, female 353.6
GTEX-RN5K-0011-R2A-SM-GQ1CA 50-59 years, female 325.4
GTEX-12696-0011-R2b-SM-GHWPY 60-69 years, male 287.8
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 277.9
GTEX-1CB4J-0011-R2a-SM-9WG5N 60-69 years, male 233.1
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 232.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 305.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 305.6
FF:10158-103A5 76 years, female 305.6

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 130.2
Pig sample Sample description nTPM
Substantia nigra
nTPM: 130.2
Samples: 4

Max nTPM: 142.4
Min nTPM: 110.7
Sample A Female 142.4
Sample B Female 133.8
Sample C Male 133.8
Sample D Male 110.7
Midbrain
nTPM: 125.2
Samples: 4

Max nTPM: 145.5
Min nTPM: 114.7
Sample A Female 145.5
Sample B Female 118.4
Sample C Male 114.7
Sample D Male 122.1
Periaqueductal gray
nTPM: 124.5
Samples: 3

Max nTPM: 136.4
Min nTPM: 111.8
Sample B Female 111.8
Sample C Male 125.4
Sample D Male 136.4
Superior colliculi
nTPM: 129.2
Samples: 4

Max nTPM: 152.6
Min nTPM: 106.5
Sample A Female 136.1
Sample B Female 152.6
Sample C Male 106.5
Sample D Male 121.7

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 278.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 278.8
Samples: 4

Max nTPM: 308.9
Min nTPM: 242.4
Sample A Male 242.4
Sample B Male 273.0
Sample C Female 308.9
Sample D Female 290.8

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 16.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 16.7
75042251 Antisense, RP_060412_02_C05, Mouse strain C57BL/6J (56 days, male) 17.0
79393537 Antisense, RP_071018_02_B03, Mouse strain C57BL/6J (56 days, male) 16.4

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