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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:55.9 nTPM
HPA Brain:111.1 nTPM
GTEx:55.9 nTPM
FANTOM5:63.8 Scaled Tags Per Million
Pig:372.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

111.1
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 101.6
2565 Male, age 75, midline 122.6
2194 Female, age 79, both hemispheres 108.8
1981 Female, age 72, midline 101.7
2816 Male, age 47, midline 96.7
2048 Male, age 55, midline 78.3
Cervical spinal cord, dorsal horn
nTPM: 111.1
2297 Male, age 75, both hemispheres 149.3
2721 Male, age 90, both hemispheres 122.2
1877 Male, age 55, unknown 118.1
2069 Male, age 47, both hemispheres 112.3
2173 Female, age 72, unknown 87.6
2296 Male, age 66, both hemispheres 77.1
Cervical spinal cord, ventral horn
nTPM: 102.8
2480 Male, age 75, both hemispheres 116.9
2295 Male, age 66, both hemispheres 116.7
2820 Female, age 79, both hemispheres 103.4
2068 Male, age 55, unknown 101.9
2809 Male, age 90, both hemispheres 99.5
2098 Female, age 72, unknown 78.3

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

55.9
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 55.9
Samples: 204

Max nTPM: 121.6
Min nTPM: 34.8
Std nTPM: 13.5
Median nTPM: 52.9
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 121.6
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 108.5
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 103.1
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 97.0
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 90.4
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 89.9
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 86.0
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 85.8
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 84.9
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 83.6
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 82.9
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 82.8
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 81.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 79.3
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 79.1
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 78.4
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 76.9
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 76.2
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 75.7
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 75.1
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 72.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 72.8
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 72.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 71.5
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 70.5
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 70.1
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 69.6
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 69.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 68.7
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 68.5
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 68.2
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 68.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 67.5
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 67.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 66.9
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 66.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 66.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 66.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 66.0
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 65.8
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 64.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 63.8
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 63.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 63.6
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 63.3
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 63.3
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 62.4
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 62.4
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 61.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 61.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 61.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 60.3
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 60.3
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 60.3
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 60.3
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 60.0
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 59.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 59.6
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 59.6
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 59.0
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 58.9
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 58.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 58.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 58.3
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 57.9
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 57.2
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 57.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 57.1
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 57.0
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 56.7
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 56.4
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 56.3
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 56.3
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 56.3
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 56.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 56.1
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 56.0
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 56.0
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 56.0
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 55.7
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 55.4
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 55.4
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 55.3
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 55.2
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 55.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 55.0
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 55.0
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 54.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 54.4
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 54.4
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 54.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 54.0
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 53.9
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 53.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 53.5
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 53.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 53.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 53.2
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 53.1
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 53.0
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 52.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 52.9
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 52.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 52.6
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 52.5
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 52.4
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 52.2
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 52.2
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 52.0
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 51.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 51.8
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 51.6
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 51.5
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 51.4
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 51.0
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 50.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 50.7
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 50.5
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 50.4
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 50.0
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 49.9
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 49.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 49.8
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 49.8
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 49.8
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 49.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 49.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 49.5
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 49.4
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 49.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 49.2
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 49.1
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 49.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 48.9
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 48.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 48.5
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 48.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 48.3
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 48.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 48.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 48.0
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 47.9
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 47.6
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 47.6
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 47.5
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 47.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 47.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 47.3
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 47.2
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 47.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 47.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 47.1
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 47.0
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 47.0
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 47.0
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 46.9
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 46.9
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 46.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 46.8
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 46.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 46.3
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 46.3
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 46.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 46.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 46.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 45.8
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 45.4
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 45.2
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 45.1
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 45.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 45.0
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 45.0
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 44.8
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 44.6
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 44.3
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 44.3
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 44.2
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 44.0
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 43.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 43.9
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 43.8
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 43.1
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 43.0
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 43.0
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 42.7
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 42.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 41.9
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 41.8
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 41.5
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 41.2
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 41.1
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 41.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 40.7
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 40.6
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 39.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 39.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 39.1
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 38.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 37.9
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 37.8
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 37.8
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 36.8
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 36.7
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 34.8
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

63.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 63.8
FF:10181-103D1 60 years, female 74.3
FF:10159-103A6 76 years, female 53.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

372.0
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 372.0
Samples: 4

Max nTPM: 518.5
Min nTPM: 249.9
Sample A Female 518.5
Sample B Female 249.9
Sample C Male 286.8
Sample D Male 432.6
Ventral spinal cord
nTPM: 323.9
Samples: 4

Max nTPM: 374.1
Min nTPM: 254.5
Sample A Female 374.1
Sample B Female 306.8
Sample C Male 360.3
Sample D Male 254.5

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