BETA
MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:88.1 nTPM
HPA Brain:175.4 nTPM
GTEx:88.1 nTPM
FANTOM5:69.6 Scaled Tags Per Million
Macaque:117.5 nTPM
Mouse:82.1 nTPM
Rat:45.0 nTPM
Pig:755.0 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 175.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 133.1
2586 Male, age 75, left hemisphere 160.7
1827 Male, age 72, unknown 153.3
2411 Female, age 72, unknown 144.0
2666 Male, age 74, left hemisphere 138.6
1833 Male, age 53, unknown 134.0
2219 Male, age 76, both hemispheres 130.8
1870 Female, age 42, unknown 125.4
1830 Male, age 51, unknown 118.5
2828 Female, age 72, unknown 117.7
2019 Male, age 18, unknown 107.9
Dorsal raphe nucleus
nTPM: 152.1
2298 Female, age 72, unknown 185.4
2047 Male, age 72, unknown 169.9
2750 Male, age 76, both hemispheres 146.0
2016 Female, age 72, unknown 131.1
1828 Male, age 53, unknown 127.9
Inferior colliculus
nTPM: 139.3
2097 Female, age 72, unknown 158.6
2849 Male, age 72, unknown 148.5
1890 Male, age 53, unknown 127.3
1848 Female, age 42, unknown 122.9
Median raphe nucleus
nTPM: 175.4
2220 Male, age 76, midline 175.4
Periaquaductal grey, anterior
nTPM: 145.3
1947 Male, age 18, unknown 158.7
1795 Male, age 51, unknown 153.3
2502 Female, age 75, unknown 124.0
Periaquaductal grey, dorsal
nTPM: 148.3
1840 Male, age 53, unknown 184.1
2850 Male, age 76, both hemispheres 147.4
2464 Female, age 72, unknown 131.9
1831 Male, age 72, unknown 129.9
Periaquaductal grey, lateral
nTPM: 128.9
2140 Male, age 76, both hemispheres 140.0
2053 Male, age 18, unknown 125.1
2272 Male, age 74, both hemispheres 121.8
Pretectal area
nTPM: 140.2
2224 Female, age 72, unknown 172.0
2825 Male, age 18, unknown 155.1
1816 Male, age 51, unknown 154.5
1817 Female, age 42, unknown 152.4
2007 Male, age 72, unknown 151.4
2667 Female, age 75, unknown 135.3
1944 Female, age 72, unknown 134.8
1815 Male, age 53, unknown 134.2
2407 Male, age 75, both hemispheres 123.5
2316 Male, age 76, right hemisphere 115.4
2273 Male, age 74, both hemispheres 113.9
Red nucleus
nTPM: 102.7
2584 Male, age 75, left hemisphere 136.5
2588 Male, age 74, left hemisphere 115.6
2725 Female, age 75, unknown 114.7
2785 Male, age 18, unknown 111.1
1821 Female, age 72, unknown 105.5
2227 Male, age 72, unknown 97.8
2769 Male, age 72, unknown 96.6
1954 Female, age 42, unknown 95.2
2823 Male, age 76, right hemisphere 92.7
1904 Male, age 53, unknown 91.9
2503 Female, age 72, unknown 91.4
1865 Male, age 51, unknown 83.3
Substantia nigra
nTPM: 134.8
2665 Male, age 74, both hemispheres 152.0
1916 Female, age 42, unknown 146.7
2241 Male, age 72, unknown 146.6
1941 Male, age 53, unknown 138.4
1851 Male, age 51, unknown 137.9
1889 Female, age 72, unknown 135.8
2583 Male, age 75, right hemisphere 131.2
2590 Female, age 75, unknown 125.9
2699 Male, age 18, unknown 123.9
2409 Female, age 72, unknown 109.7
Superior colliculus
nTPM: 123.9
2664 Male, age 75, both hemispheres 150.8
2668 Female, age 75, unknown 138.8
1839 Male, age 51, unknown 138.7
1796 Male, age 53, unknown 135.1
2087 Female, age 72, unknown 128.1
2261 Male, age 18, unknown 125.1
1895 Male, age 76, right hemisphere 123.6
2587 Male, age 74, left hemisphere 114.2
1913 Female, age 42, unknown 93.3
1995 Male, age 72, unknown 90.9
Ventral tegmental area
nTPM: 137.1
2218 Male, age 76, both hemispheres 141.5
1915 Female, age 42, unknown 140.4
2410 Female, age 72, unknown 139.9
2021 Male, age 53, unknown 139.1
1942 Male, age 51, unknown 136.1
2223 Female, age 72, unknown 125.6

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 88.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 88.1
Samples: 183

Max nTPM: 315.9
Min nTPM: 44.0
Std nTPM: 36.7
Median nTPM: 81.4
GTEX-1MJK2-0011-R2b-SM-EXUS5 50-59 years, male 315.9
GTEX-WL46-0011-R2A-SM-3LK6O 50-59 years, male 268.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 192.4
GTEX-11NUK-0011-R2a-SM-GINAO 50-59 years, male 191.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 170.4
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 156.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 156.0
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 152.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 146.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 144.5
GTEX-1KD4Q-0011-R2a-SM-F649I 40-49 years, male 144.5
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 69.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 69.6
FF:10158-103A5 76 years, female 69.6

MIDBRAIN - Macaque RNA-seq
Max subtype nTPMi 117.5
Macaque sample Sample description nTPM
Substantia nigra
nTPM: 76.9
Samples: 1

Max nTPM: 76.9
Min nTPM: 76.9
Sample A 76.9
Midbrain
nTPM: 117.5
Samples: 1

Max nTPM: 117.5
Min nTPM: 117.5
Sample A 117.5
Superior colliculi
nTPM: 104.0
Samples: 1

Max nTPM: 104.0
Min nTPM: 104.0
Sample A 104.0

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 755.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 755.0
Samples: 3

Max nTPM: 884.1
Min nTPM: 501.7
Sample A Female 884.1
Sample B Female 501.7
Sample C Male 879.2
Midbrain
nTPM: 696.2
Samples: 3

Max nTPM: 987.9
Min nTPM: 473.3
Sample B Female 473.3
Sample C Male 627.4
Sample D Male 987.9
Periaqueductal gray
nTPM: 587.2
Samples: 3

Max nTPM: 778.6
Min nTPM: 465.7
Sample B Female 465.7
Sample C Male 778.6
Sample D Male 517.3
Superior colliculi
nTPM: 586.4
Samples: 4

Max nTPM: 833.4
Min nTPM: 441.0
Sample A Female 833.4
Sample B Female 441.0
Sample C Male 496.7
Sample D Male 574.3

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 82.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 82.1
Samples: 4

Max nTPM: 91.6
Min nTPM: 77.8
Sample A 80.1
Sample B 91.6
Sample C 79.1
Sample D 77.8

MIDBRAIN - Rat RNA-seq
Max subtype nTPMi 45.0
Rat sample Sample description nTPM
Midbrain
nTPM: 45.0
Samples: 4

Max nTPM: 48.0
Min nTPM: 37.9
Sample A 46.7
Sample A 47.3
Sample A 48.0
Sample A 37.9

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