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  • TISSUE

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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:226.8 nTPM
HPA Brain:121.4 nTPM
GTEx:226.8 nTPM
FANTOM5:173.2 Scaled Tags Per Million
Pig:128.5 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

121.4
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 115.0
1981 Female, age 72, midline 153.3
2048 Male, age 55, midline 111.0
2816 Male, age 47, midline 107.3
2565 Male, age 75, midline 103.6
2194 Female, age 79, both hemispheres 100.0
Cervical spinal cord, dorsal horn
nTPM: 121.4
2296 Male, age 66, both hemispheres 162.4
2173 Female, age 72, unknown 147.4
2069 Male, age 47, both hemispheres 133.1
1877 Male, age 55, unknown 108.6
2721 Male, age 90, both hemispheres 91.2
2297 Male, age 75, both hemispheres 85.7
Cervical spinal cord, ventral horn
nTPM: 107.3
2098 Female, age 72, unknown 178.1
2809 Male, age 90, both hemispheres 121.0
2068 Male, age 55, unknown 94.0
2480 Male, age 75, both hemispheres 90.4
2820 Female, age 79, both hemispheres 80.2
2295 Male, age 66, both hemispheres 80.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

226.8
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 226.8
Samples: 204

Max nTPM: 415.3
Min nTPM: 112.7
Std nTPM: 50.4
Median nTPM: 221.2
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 415.3
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 389.4
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 374.2
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 367.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 356.3
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 355.9
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 343.6
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 340.3
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 333.8
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 329.3
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 326.7
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 321.8
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 308.8
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 306.4
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 305.6
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 305.1
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 302.9
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 300.8
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 299.0
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 296.8
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 295.5
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 295.0
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 294.7
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 291.0
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 286.5
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 284.2
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 283.4
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 283.2
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 282.5
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 281.9
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 278.9
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 273.5
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 272.7
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 272.3
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 269.9
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 268.2
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 265.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 264.6
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 262.4
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 260.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 259.5
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 259.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 255.2
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 254.6
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 252.1
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 249.8
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 249.6
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 249.0
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 248.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 248.6
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 248.5
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 247.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 247.3
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 245.9
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 245.3
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 245.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 243.7
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 242.8
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 242.6
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 241.6
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 241.5
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 240.7
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 240.4
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 240.2
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 239.0
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 238.1
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 238.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 238.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 236.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 236.1
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 235.1
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 234.8
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 234.8
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 234.6
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 234.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 233.6
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 233.6
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 232.7
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 232.6
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 232.5
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 231.7
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 231.6
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 231.0
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 230.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 230.6
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 230.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 229.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 228.8
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 228.8
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 226.9
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 226.8
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 226.5
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 226.3
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 225.6
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 225.4
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 224.2
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 224.1
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 223.3
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 222.9
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 222.8
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 221.9
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 221.5
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 221.0
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 220.9
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 220.3
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 219.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 219.4
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 219.1
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 219.0
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 218.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 217.6
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 216.9
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 216.5
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 216.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 216.2
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 215.7
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 215.2
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 215.2
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 214.5
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 213.2
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 212.2
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 211.9
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 211.6
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 211.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 210.8
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 209.9
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 209.8
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 209.7
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 209.5
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 209.0
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 208.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 208.1
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 208.0
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 206.6
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 206.3
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 205.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 203.8
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 201.7
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 201.6
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 201.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 201.3
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 201.0
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 200.9
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 199.4
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 198.9
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 198.8
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 198.3
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 198.1
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 198.0
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 197.0
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 196.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 195.8
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 194.7
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 194.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 194.3
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 193.9
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 192.9
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 192.0
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 191.7
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 191.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 189.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 186.8
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 186.4
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 186.0
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 183.7
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 182.6
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 182.4
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 182.2
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 181.0
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 180.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 179.3
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 178.7
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 177.1
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 175.3
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 175.2
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 175.2
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 173.8
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 173.8
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 173.7
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 172.7
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 172.3
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 170.8
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 168.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 168.1
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 168.0
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 167.6
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 167.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 167.4
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 166.7
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 166.1
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 165.6
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 163.4
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 158.2
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 157.9
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 157.8
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 156.1
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 151.6
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 151.1
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 150.2
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 149.8
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 144.8
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 121.7
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 113.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 112.7
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

173.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 173.2
FF:10159-103A6 76 years, female 185.3
FF:10181-103D1 60 years, female 161.1

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

128.5
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 128.5
Samples: 4

Max nTPM: 170.2
Min nTPM: 109.4
Sample A Female 114.1
Sample B Female 120.4
Sample C Male 170.2
Sample D Male 109.4
Ventral spinal cord
nTPM: 127.7
Samples: 4

Max nTPM: 144.1
Min nTPM: 111.3
Sample A Female 111.3
Sample B Female 130.1
Sample C Male 144.1
Sample D Male 125.4

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