A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
347.5
nTPM
Monaco:
253.5
nTPM
Schmiedel:
71.5
TPM
B-CELLS - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
347.5
HPA sample
nTPM
Memory B-cell nTPM: 347.5
Samples: 6
Max nTPM: 597.4
Min nTPM: 180.9
P10809_1017
180.9
P10809_1025
355.8
P10809_1044
597.4
P10809_1063
295.9
P10809_1092
307.2
P10809_1105
347.6
Naive B-cell nTPM: 347.5
Samples: 6
Max nTPM: 775.9
Min nTPM: 156.5
P10809_1011
156.5
P10809_1029
241.3
P10809_1048
775.9
P10809_1067
280.9
P10809_1091
290.7
P10809_1104
339.7
B-CELLS - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
253.5
Monaco sample
nTPM
Exhausted memory B-cell nTPM: 239.8
Samples: 4
Max nTPM: 351.8
Min nTPM: 144.3
RHH5310_R3677
298.4
RHH5218_R3590
164.7
RHH5247_R3619
351.8
RHH5276_R3648
144.3
Naive B-cell nTPM: 219.4
Samples: 4
Max nTPM: 292.5
Min nTPM: 147.0
RHH5308_R3675
292.5
RHH5216_R3588
266.4
RHH5245_R3617
147.0
RHH5274_R3646
171.7
Non-switched memory B-cell nTPM: 244.4
Samples: 4
Max nTPM: 348.5
Min nTPM: 164.2
RHH5309_R3676
277.8
RHH5217_R3589
187.0
RHH5246_R3618
348.5
RHH5275_R3647
164.2
Plasmablast nTPM: 157.4
Samples: 4
Max nTPM: 179.4
Min nTPM: 127.0
RHH5312_R3679
162.5
RHH5220_R3592
160.6
RHH5249_R3621
179.4
RHH5278_R3650
127.0
Switched memory B-cell nTPM: 253.5
Samples: 4
Max nTPM: 404.6
Min nTPM: 142.9
RHH5311_R3678
404.6
RHH5219_R3591
288.6
RHH5248_R3620
177.9
RHH5277_R3649
142.9
B-CELLS - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
71.5
Schmiedel sample id
TPM
Naive B-cell TPM: 71.5
Samples: 91
Max TPM: 107.3
Min TPM: 37.0
B_CELL_NAIVE_1
107.3
B_CELL_NAIVE_2
100.7
B_CELL_NAIVE_3
98.6
B_CELL_NAIVE_4
97.4
B_CELL_NAIVE_5
97.1
B_CELL_NAIVE_6
96.9
B_CELL_NAIVE_7
96.9
B_CELL_NAIVE_8
95.8
B_CELL_NAIVE_9
94.5
B_CELL_NAIVE_10
93.6
B_CELL_NAIVE_11
93.4
B_CELL_NAIVE_12
92.0
B_CELL_NAIVE_13
91.9
B_CELL_NAIVE_14
89.1
B_CELL_NAIVE_15
88.3
B_CELL_NAIVE_16
87.7
B_CELL_NAIVE_17
86.2
B_CELL_NAIVE_18
83.4
B_CELL_NAIVE_19
82.6
B_CELL_NAIVE_20
82.6
B_CELL_NAIVE_21
81.7
B_CELL_NAIVE_22
80.9
B_CELL_NAIVE_23
80.5
B_CELL_NAIVE_24
80.0
B_CELL_NAIVE_25
79.5
B_CELL_NAIVE_26
79.3
B_CELL_NAIVE_27
79.0
B_CELL_NAIVE_28
78.0
B_CELL_NAIVE_29
77.8
B_CELL_NAIVE_30
77.1
B_CELL_NAIVE_31
76.8
B_CELL_NAIVE_32
75.6
B_CELL_NAIVE_33
75.5
B_CELL_NAIVE_34
74.4
B_CELL_NAIVE_35
74.1
B_CELL_NAIVE_36
74.1
B_CELL_NAIVE_37
73.8
B_CELL_NAIVE_38
73.4
B_CELL_NAIVE_39
73.2
B_CELL_NAIVE_40
73.2
B_CELL_NAIVE_41
72.0
B_CELL_NAIVE_42
71.9
B_CELL_NAIVE_43
71.9
B_CELL_NAIVE_44
71.2
B_CELL_NAIVE_45
70.7
B_CELL_NAIVE_46
69.9
B_CELL_NAIVE_47
69.7
B_CELL_NAIVE_48
69.6
B_CELL_NAIVE_49
68.8
B_CELL_NAIVE_50
68.3
B_CELL_NAIVE_51
68.2
B_CELL_NAIVE_52
68.1
B_CELL_NAIVE_53
67.6
B_CELL_NAIVE_54
66.0
B_CELL_NAIVE_55
64.9
B_CELL_NAIVE_56
64.8
B_CELL_NAIVE_57
64.3
B_CELL_NAIVE_58
62.9
B_CELL_NAIVE_59
62.8
B_CELL_NAIVE_60
62.1
B_CELL_NAIVE_61
62.0
B_CELL_NAIVE_62
61.9
B_CELL_NAIVE_63
61.7
B_CELL_NAIVE_64
61.6
B_CELL_NAIVE_65
61.5
B_CELL_NAIVE_66
61.4
B_CELL_NAIVE_67
61.1
B_CELL_NAIVE_68
61.0
B_CELL_NAIVE_69
60.9
B_CELL_NAIVE_70
60.9
B_CELL_NAIVE_71
60.6
B_CELL_NAIVE_72
60.4
B_CELL_NAIVE_73
60.2
B_CELL_NAIVE_74
59.5
B_CELL_NAIVE_75
59.4
B_CELL_NAIVE_76
58.6
B_CELL_NAIVE_77
57.5
B_CELL_NAIVE_78
56.2
B_CELL_NAIVE_79
56.0
B_CELL_NAIVE_80
55.6
B_CELL_NAIVE_81
55.6
B_CELL_NAIVE_82
54.6
B_CELL_NAIVE_83
54.6
B_CELL_NAIVE_84
53.1
B_CELL_NAIVE_85
53.1
B_CELL_NAIVE_86
52.7
B_CELL_NAIVE_87
52.1
B_CELL_NAIVE_88
51.7
B_CELL_NAIVE_89
49.7
B_CELL_NAIVE_90
40.6
B_CELL_NAIVE_91
37.0
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