A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.
Scroll down to view mRNA expression data in more detail.
HPA:
256.6
nTPM
Monaco:
181.5
nTPM
Schmiedel:
80.0
TPM
MONOCYTES - HPA RNA-seqi
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
256.6
HPA sample
nTPM
Classical monocyte nTPM: 256.6
Samples: 6
Max nTPM: 383.5
Min nTPM: 177.5
P10809_1003
177.5
P10809_1020
229.2
P10809_1039
383.5
P10809_1058
204.7
P10809_1080
269.7
P10809_1107
275.1
Intermediate monocyte nTPM: 254.5
Samples: 6
Max nTPM: 316.8
Min nTPM: 182.7
P10809_1004
185.3
P10809_1023
276.0
P10809_1042
303.3
P10809_1061
182.7
P10809_1081
263.2
P10809_1108
316.8
Non-classical monocyte nTPM: 229.6
Samples: 5
Max nTPM: 285.1
Min nTPM: 162.7
P10809_1005
162.7
P10809_1053
218.1
P10809_1072
249.8
P10809_1082
232.2
P10809_1109
285.1
MONOCYTES - Monaco RNA-seqi
RNA-Seq data generated by Monaco et al is reported as average nTPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Max subtype nTPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
181.5
Monaco sample
nTPM
Classical monocyte nTPM: 167.3
Samples: 4
Max nTPM: 196.6
Min nTPM: 112.5
RHH5313_R3680
172.8
RHH5221_R3593
112.5
RHH5250_R3622
196.6
RHH5279_R3651
187.3
Intermediate monocyte nTPM: 181.5
Samples: 4
Max nTPM: 234.7
Min nTPM: 140.5
RHH5314_R3681
234.7
RHH5222_R3594
140.5
RHH5251_R3623
144.8
RHH5280_R3652
206.1
Non-classical monocyte nTPM: 125.6
Samples: 4
Max nTPM: 146.8
Min nTPM: 106.2
RHH5315_R3682
138.1
RHH5223_R3595
111.1
RHH5252_R3624
106.2
RHH5281_R3653
146.8
MONOCYTES - Schmiedel RNA-seqi
RNA-Seq data generated by Schmiedel et al is reported as average TPM.
The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.
Information about each individual sample is listed below. TPM (transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples. Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. TPM values of the individual samples are presented next to the box plot.
Max subtype TPMi
Max subtype nTPM is the value for the subtype that has the largest average nTPM across subtype samples.
80.0
Schmiedel sample id
TPM
Classical monocyte TPM: 70.3
Samples: 91
Max TPM: 97.5
Min TPM: 50.5
MONOCYTES_1
97.5
MONOCYTES_2
91.9
MONOCYTES_3
88.5
MONOCYTES_4
88.2
MONOCYTES_5
87.1
MONOCYTES_6
86.7
MONOCYTES_7
85.5
MONOCYTES_8
85.2
MONOCYTES_9
83.6
MONOCYTES_10
83.0
MONOCYTES_11
82.9
MONOCYTES_12
82.2
MONOCYTES_13
82.0
MONOCYTES_14
80.8
MONOCYTES_15
79.9
MONOCYTES_16
79.3
MONOCYTES_17
78.6
MONOCYTES_18
78.2
MONOCYTES_19
77.9
MONOCYTES_20
76.6
MONOCYTES_21
75.8
MONOCYTES_22
75.5
MONOCYTES_23
75.3
MONOCYTES_24
75.1
MONOCYTES_25
74.9
MONOCYTES_26
74.4
MONOCYTES_27
74.2
MONOCYTES_28
74.2
MONOCYTES_29
74.1
MONOCYTES_30
74.0
MONOCYTES_31
74.0
MONOCYTES_32
73.9
MONOCYTES_33
73.8
MONOCYTES_34
73.6
MONOCYTES_35
73.4
MONOCYTES_36
73.3
MONOCYTES_37
73.3
MONOCYTES_38
73.2
MONOCYTES_39
73.1
MONOCYTES_40
72.7
MONOCYTES_41
72.6
MONOCYTES_42
72.2
MONOCYTES_43
72.2
MONOCYTES_44
72.2
MONOCYTES_45
71.9
MONOCYTES_46
71.7
MONOCYTES_47
71.3
MONOCYTES_48
69.8
MONOCYTES_49
69.8
MONOCYTES_50
69.6
MONOCYTES_51
69.3
MONOCYTES_52
68.8
MONOCYTES_53
68.4
MONOCYTES_54
68.3
MONOCYTES_55
68.2
MONOCYTES_56
67.5
MONOCYTES_57
66.2
MONOCYTES_58
65.8
MONOCYTES_59
65.8
MONOCYTES_60
65.5
MONOCYTES_61
65.5
MONOCYTES_62
65.4
MONOCYTES_63
65.2
MONOCYTES_64
65.0
MONOCYTES_65
64.6
MONOCYTES_66
64.0
MONOCYTES_67
63.9
MONOCYTES_68
63.7
MONOCYTES_69
63.3
MONOCYTES_70
63.3
MONOCYTES_71
62.8
MONOCYTES_72
62.6
MONOCYTES_73
62.2
MONOCYTES_74
61.7
MONOCYTES_75
61.6
MONOCYTES_76
60.0
MONOCYTES_77
59.4
MONOCYTES_78
58.9
MONOCYTES_79
58.9
MONOCYTES_80
58.4
MONOCYTES_81
58.4
MONOCYTES_82
58.3
MONOCYTES_83
56.2
MONOCYTES_84
55.7
MONOCYTES_85
55.5
MONOCYTES_86
55.4
MONOCYTES_87
55.0
MONOCYTES_88
54.0
MONOCYTES_89
53.0
MONOCYTES_90
50.8
MONOCYTES_91
50.5
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Non-classical monocyte TPM: 80.0
Samples: 90
Max TPM: 113.9
Min TPM: 52.1
M2_1
113.9
M2_2
110.3
M2_3
103.1
M2_4
99.5
M2_5
96.5
M2_6
96.5
M2_7
96.3
M2_8
94.8
M2_9
92.4
M2_10
92.2
M2_11
90.9
M2_12
90.8
M2_13
90.4
M2_14
89.8
M2_15
88.0
M2_16
86.9
M2_17
86.9
M2_18
86.9
M2_19
86.7
M2_20
86.4
M2_21
86.2
M2_22
85.6
M2_23
85.1
M2_24
85.0
M2_25
84.8
M2_26
83.6
M2_27
83.3
M2_28
83.0
M2_29
82.9
M2_30
82.8
M2_31
82.7
M2_32
82.7
M2_33
82.7
M2_34
82.6
M2_35
81.8
M2_36
81.7
M2_37
81.6
M2_38
81.1
M2_39
80.9
M2_40
80.9
M2_41
80.3
M2_42
79.4
M2_43
79.3
M2_44
78.7
M2_45
78.7
M2_46
78.3
M2_47
78.1
M2_48
77.9
M2_49
77.8
M2_50
77.6
M2_51
76.7
M2_52
76.6
M2_53
76.6
M2_54
76.3
M2_55
76.2
M2_56
76.0
M2_57
75.9
M2_58
75.8
M2_59
75.7
M2_60
75.7
M2_61
75.6
M2_62
75.6
M2_63
75.0
M2_64
74.9
M2_65
74.4
M2_66
74.0
M2_67
74.0
M2_68
73.9
M2_69
73.9
M2_70
73.9
M2_71
73.8
M2_72
73.5
M2_73
73.4
M2_74
72.7
M2_75
72.5
M2_76
72.4
M2_77
72.1
M2_78
71.6
M2_79
70.2
M2_80
70.1
M2_81
69.5
M2_82
68.7
M2_83
67.0
M2_84
66.9
M2_85
64.9
M2_86
64.6
M2_87
64.4
M2_88
64.3
M2_89
62.5
M2_90
52.1
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