MIDBRAIN - Expression summary
Protein expressioni No data
RNA expressioni
Consensus:80.8 nTPM
HPA Brain:406.7 nTPM
GTEx:80.8 nTPM
FANTOM5:315.3 Scaled Tags Per Million
Pig:361.0 nTPM
Mouse:164.6 nTPM
Allen mouse:14.8 Expression energy
BRAIN - SINGLE CELL RNA EXPRESSION

MIDBRAIN - HPA Brain RNA-seq
Max subtype nTPMi 406.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 343.7
2666 Male, age 74, left hemisphere 422.4
2019 Male, age 18, unknown 413.2
2586 Male, age 75, left hemisphere 385.4
1827 Male, age 72, unknown 377.9
2828 Female, age 72, unknown 364.7
2219 Male, age 76, both hemispheres 337.2
2411 Female, age 72, unknown 304.7
1833 Male, age 53, unknown 290.4
1830 Male, age 51, unknown 274.4
1870 Female, age 42, unknown 266.4
Dorsal raphe nucleus
nTPM: 303.3
1828 Male, age 53, unknown 373.5
2047 Male, age 72, unknown 349.0
2298 Female, age 72, unknown 289.6
2750 Male, age 76, both hemispheres 288.6
2016 Female, age 72, unknown 215.7
Inferior colliculus
nTPM: 319.3
1848 Female, age 42, unknown 340.4
1890 Male, age 53, unknown 330.1
2097 Female, age 72, unknown 316.0
2849 Male, age 72, unknown 290.8
Median raphe nucleus
nTPM: 319.5
2220 Male, age 76, midline 319.5
Periaquaductal grey, anterior
nTPM: 305.7
1795 Male, age 51, unknown 327.8
1947 Male, age 18, unknown 312.1
2502 Female, age 75, unknown 277.2
Periaquaductal grey, dorsal
nTPM: 235.8
1831 Male, age 72, unknown 273.4
2464 Female, age 72, unknown 253.3
1840 Male, age 53, unknown 211.6
2850 Male, age 76, both hemispheres 205.0
Periaquaductal grey, lateral
nTPM: 215.6
2053 Male, age 18, unknown 233.3
2272 Male, age 74, both hemispheres 216.5
2140 Male, age 76, both hemispheres 197.0
Pretectal area
nTPM: 356.1
1944 Female, age 72, unknown 532.1
1816 Male, age 51, unknown 515.5
1817 Female, age 42, unknown 487.7
2007 Male, age 72, unknown 486.5
1815 Male, age 53, unknown 382.7
2407 Male, age 75, both hemispheres 313.2
2667 Female, age 75, unknown 304.7
2825 Male, age 18, unknown 243.0
2224 Female, age 72, unknown 236.6
2316 Male, age 76, right hemisphere 212.3
2273 Male, age 74, both hemispheres 203.0
Red nucleus
nTPM: 325.8
2588 Male, age 74, left hemisphere 397.7
2584 Male, age 75, left hemisphere 395.6
2785 Male, age 18, unknown 387.4
1821 Female, age 72, unknown 332.6
1865 Male, age 51, unknown 315.9
2503 Female, age 72, unknown 314.0
2823 Male, age 76, right hemisphere 312.7
2725 Female, age 75, unknown 302.9
2769 Male, age 72, unknown 293.8
1954 Female, age 42, unknown 292.2
2227 Male, age 72, unknown 291.6
1904 Male, age 53, unknown 273.7
Substantia nigra
nTPM: 406.7
1941 Male, age 53, unknown 582.5
1916 Female, age 42, unknown 506.2
1889 Female, age 72, unknown 472.1
1851 Male, age 51, unknown 398.0
2665 Male, age 74, both hemispheres 393.3
2583 Male, age 75, right hemisphere 374.8
2241 Male, age 72, unknown 344.4
2590 Female, age 75, unknown 343.7
2409 Female, age 72, unknown 337.4
2699 Male, age 18, unknown 314.6
Superior colliculus
nTPM: 332.8
2668 Female, age 75, unknown 486.3
2087 Female, age 72, unknown 452.0
2261 Male, age 18, unknown 350.1
1895 Male, age 76, right hemisphere 338.2
1796 Male, age 53, unknown 327.8
2664 Male, age 75, both hemispheres 314.3
1839 Male, age 51, unknown 282.9
1913 Female, age 42, unknown 277.4
2587 Male, age 74, left hemisphere 271.6
1995 Male, age 72, unknown 227.3
Ventral tegmental area
nTPM: 340.2
2218 Male, age 76, both hemispheres 391.7
2410 Female, age 72, unknown 391.5
1915 Female, age 42, unknown 378.6
2223 Female, age 72, unknown 351.8
1942 Male, age 51, unknown 294.2
2021 Male, age 53, unknown 233.5

MIDBRAIN - GTEx RNA-seqi
Max subtype nTPMi 80.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 80.8
Samples: 183

Max nTPM: 295.6
Min nTPM: 28.0
Std nTPM: 40.3
Median nTPM: 70.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 295.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 199.5
GTEX-1PIIG-0011-R2b-SM-F648W 30-39 years, male 186.6
GTEX-WVLH-0011-R2A-SM-3MJFJ 50-59 years, male 186.0
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 182.2
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 176.9
GTEX-117XS-0011-R2b-SM-GI4VT 60-69 years, male 174.7
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 169.4
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 161.5
GTEX-QVJO-0011-R2A-SM-2S1QK 60-69 years, female 160.5
GTEX-13OW7-0011-R2b-SM-H6Q8E 50-59 years, male 159.4
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MIDBRAIN - FANTOM5 CAGEi
Max subtype Scaled Tags Per Millioni 315.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 315.3
FF:10158-103A5 76 years, female 315.3

MIDBRAIN - Pig RNA-seqi
Max subtype nTPMi 361.0
Pig sample Sample description nTPM
Substantia nigra
nTPM: 292.7
Samples: 4

Max nTPM: 361.0
Min nTPM: 185.0
Sample A Female 361.0
Sample B Female 185.0
Sample C Male 347.1
Sample D Male 277.8
Midbrain
nTPM: 324.4
Samples: 4

Max nTPM: 476.8
Min nTPM: 233.7
Sample A Female 259.4
Sample B Female 233.7
Sample C Male 476.8
Sample D Male 327.6
Periaqueductal gray
nTPM: 212.5
Samples: 3

Max nTPM: 242.7
Min nTPM: 177.2
Sample B Female 217.5
Sample C Male 242.7
Sample D Male 177.2
Superior colliculi
nTPM: 361.0
Samples: 4

Max nTPM: 520.0
Min nTPM: 163.6
Sample A Female 351.9
Sample B Female 163.6
Sample C Male 520.0
Sample D Male 408.5

MIDBRAIN - Mouse RNA-seqi
Max subtype nTPMi 164.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 164.6
Samples: 4

Max nTPM: 176.1
Min nTPM: 138.5
Sample A Male 138.5
Sample B Male 171.1
Sample C Female 172.8
Sample D Female 176.1

MIDBRAIN - Allen Mouse ISHi
Max subtype Expression energyi 14.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 14.8
71570736 Antisense, RP_050505_01_H05, Mouse strain C57BL/6J (56 days, male) 15.3
76115734 Antisense, RP_060620_02_C02, Mouse strain C57BL/6J (56 days, male) 14.2

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