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  • MAP1A
BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX CHOROID PLEXUS HIPPOCAMPAL FORMATION HYPOTHALAMUS
MEDULLA OBLONGATA MIDBRAIN OLFACTORY BULB PONS SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Brain methods
SPINAL CORD - Expression summary
Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units. Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set. If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas HPA, Genotype-Tissue Expression GTEx portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets. The mRNA expression levels in pig brain are based on RNA-seq data generated by the Human Protein Atlas, and for mouse brain HPA data and in situ hybridization generated by the Allen brain atlas dataset are reported.

Scroll down to view mRNA expression data in more detail.

Consensus:59.1 nTPM
HPA Brain:332.3 nTPM
GTEx:59.1 nTPM
FANTOM5:486.5 Scaled Tags Per Million
Pig:364.8 nTPM
BRAIN - SINGLE CELL RNA EXPRESSION
Explore single cell type data

SPINAL CORD - HPA Brain RNA-seq
Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

332.3
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 293.4
2194 Female, age 79, both hemispheres 393.9
2816 Male, age 47, midline 283.3
2565 Male, age 75, midline 281.8
1981 Female, age 72, midline 263.6
2048 Male, age 55, midline 244.6
Cervical spinal cord, dorsal horn
nTPM: 294.4
2296 Male, age 66, both hemispheres 341.7
2173 Female, age 72, unknown 300.5
2297 Male, age 75, both hemispheres 294.2
2721 Male, age 90, both hemispheres 287.8
1877 Male, age 55, unknown 275.9
2069 Male, age 47, both hemispheres 266.4
Cervical spinal cord, ventral horn
nTPM: 332.3
2820 Female, age 79, both hemispheres 503.1
2480 Male, age 75, both hemispheres 369.3
2068 Male, age 55, unknown 355.3
2809 Male, age 90, both hemispheres 282.3
2295 Male, age 66, both hemispheres 262.6
2098 Female, age 72, unknown 221.4

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

59.1
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 59.1
Samples: 204

Max nTPM: 157.7
Min nTPM: 24.2
Std nTPM: 17.3
Median nTPM: 58.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 157.7
GTEX-1JMQL-0011-R9b-SM-G8LLH 50-59 years, female 128.5
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 112.6
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 107.6
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 106.4
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 99.9
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 91.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 90.1
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 87.9
GTEX-1KD4Q-0011-R9a-SM-G8LLU 40-49 years, male 87.4
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 84.8
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 84.5
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 82.3
GTEX-12WSI-0011-R9b-SM-GHWOU 50-59 years, male 82.1
GTEX-1QP6S-0011-R9a-SM-G8LMO 40-49 years, male 81.7
GTEX-1R9PO-0011-R9a-SM-G8LKP 60-69 years, female 80.5
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 80.1
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 80.1
GTEX-1PPGY-0011-R9a-SM-G8LMR 60-69 years, male 80.0
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 79.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 79.0
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 77.7
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 75.9
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 75.8
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 75.5
GTEX-WVLH-0011-R9A-SM-H7OHH 50-59 years, male 75.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 75.3
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 74.4
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 74.3
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 73.8
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 73.5
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 73.3
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 73.1
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 72.2
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 72.1
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 72.1
GTEX-1JN6P-0011-R9a-SM-G8LM9 60-69 years, male 70.8
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 70.7
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 70.3
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 70.2
GTEX-1J8Q2-0011-R9b-SM-GPRYH 60-69 years, male 70.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 70.0
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 69.9
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 69.9
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 68.7
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 68.6
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 67.6
GTEX-117YW-0011-R9a-SM-GHWPQ 50-59 years, male 67.5
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 67.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 67.3
GTEX-1RDX4-0011-R9b-SM-G8LMG 50-59 years, female 66.8
GTEX-11DXW-0011-R9a-SM-GHWOE 40-49 years, male 66.7
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 66.5
GTEX-11NUK-0011-R9a-SM-GI4XG 50-59 years, male 66.0
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 65.7
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 65.7
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 65.7
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 65.6
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 65.6
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 65.4
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 64.7
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 64.1
GTEX-1RAZS-0011-R9b-SM-G8OMS 50-59 years, male 64.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 64.0
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 63.9
GTEX-117XS-0011-R9b-SM-GHWOG 60-69 years, male 63.8
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 63.8
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 63.4
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 63.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 63.2
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 63.2
GTEX-13112-0011-R9b-SM-GHWOV 50-59 years, male 63.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 62.8
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 62.5
GTEX-1IL2U-0011-R9a-SM-GPRYC 60-69 years, male 62.4
GTEX-111VG-0011-R9b-SM-GHWOB 60-69 years, male 62.3
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 62.3
GTEX-12584-0011-R9b-SM-GI4WC 40-49 years, male 62.2
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 62.2
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 62.2
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 62.2
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 62.1
GTEX-11GSO-0011-R9b-SM-GI4VN 60-69 years, male 62.0
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 62.0
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 61.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 61.4
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 61.1
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 61.0
GTEX-1JMPZ-0011-R9a-SM-G8OLH 30-39 years, male 60.7
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 60.5
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 60.2
GTEX-1PWST-0011-R9a-SM-G8OMQ 70-79 years, male 60.0
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 59.9
GTEX-1JMQJ-0011-R9b-SM-G8OKN 50-59 years, male 59.5
GTEX-13G51-0011-R9b-SM-GHWPS 60-69 years, male 59.3
GTEX-ZV68-0011-R9b-SM-GNTB9 50-59 years, female 59.1
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 58.8
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 58.7
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 58.6
GTEX-1A8G6-0011-R9a-SM-GOQZR 60-69 years, male 58.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 58.4
GTEX-1PIIG-0011-R9b-SM-G8OLU 30-39 years, male 58.3
GTEX-1N5O9-0011-R9a-SM-G8LLD 60-69 years, male 58.2
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 57.6
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 57.5
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 57.4
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 56.8
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 56.8
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 56.7
GTEX-113JC-0011-R9a-SM-H6Q8K 50-59 years, female 56.5
GTEX-1MCQQ-0011-R9b-SM-G8OKM 60-69 years, male 56.3
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 56.1
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 55.9
GTEX-1QMI2-0011-R9a-SM-G8ON7 60-69 years, male 55.9
GTEX-NPJ7-0011-R9a-SM-G8W5X 60-69 years, female 55.7
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 55.6
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 55.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 55.4
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 55.2
GTEX-16GPK-0011-R9a-SM-GPI9P 60-69 years, male 55.1
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 54.7
GTEX-1O9I2-0011-R9b-SM-G8OKW 50-59 years, male 54.3
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 54.0
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 53.8
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 53.7
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 53.3
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 53.0
GTEX-14JFF-0011-R9b-SM-G9ERJ 60-69 years, male 53.0
GTEX-1POEN-0011-R9b-SM-G8LL1 30-39 years, female 52.9
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 52.2
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 52.1
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 51.9
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 51.7
GTEX-1212Z-0011-R9b-SM-GHWPM 60-69 years, male 51.4
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 51.2
GTEX-1LG7Y-0011-R9a-SM-G8LMA 50-59 years, male 51.2
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 50.8
GTEX-1LSVX-0011-R9b-SM-G8LL2 60-69 years, male 50.7
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 50.5
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 50.3
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 50.2
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 50.2
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 49.9
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 49.8
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 49.5
GTEX-1LH75-0011-R9b-SM-EY5Y9 50-59 years, female 48.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 48.7
GTEX-11ZU8-0011-R9b-SM-GHWOL 60-69 years, male 48.6
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 48.1
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 47.8
GTEX-12696-0011-R9a-SM-GHWPX 60-69 years, male 47.4
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 47.4
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 47.4
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 47.4
GTEX-11NV4-0011-R9a-SM-GHWPP 60-69 years, male 47.1
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 47.1
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 46.9
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 46.9
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 46.6
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 46.3
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 46.1
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 46.1
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 46.0
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 45.9
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 45.8
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 45.3
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 45.1
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 44.8
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 44.7
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 44.6
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 44.5
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 44.1
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 43.9
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 43.8
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 43.4
GTEX-ZZPT-0011-R9a-SM-GOQYS 50-59 years, male 43.4
GTEX-ZAJG-0011-R9a-SM-GNTAY 50-59 years, female 43.3
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 43.0
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 42.7
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 42.0
GTEX-1J1OQ-0011-R9b-SM-GRR22 40-49 years, female 41.3
GTEX-15SHU-0011-R9a-SM-GNIOE 40-49 years, female 41.1
GTEX-1NV8Z-0011-R9b-SM-G8OME 60-69 years, male 40.8
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 40.4
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 40.0
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 39.7
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 39.5
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 39.1
GTEX-1269C-0011-R9b-SM-GI4WM 60-69 years, female 38.6
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 38.4
GTEX-13QIC-0011-R9a-SM-GI4WO 60-69 years, female 38.3
GTEX-X4EP-0011-R9B-SM-4QASI 60-69 years, female 36.6
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 36.1
GTEX-1LKK1-0011-R9a-SM-G8OLY 50-59 years, female 36.1
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 34.5
GTEX-1JMOU-0011-R9b-SM-EY5YI 60-69 years, female 33.3
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 32.1
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 31.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 30.9
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 28.2
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 28.1
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 26.6
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 25.5
GTEX-15UF6-0011-R9b-SM-GOQZG 70-79 years, female 24.2
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SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Max subtype Scaled Tags Per Millioni

Max subtype Scaled Tags Per Million is the value for the subtype with the largest average Scaled Tags Per Million across the subtype samples.

486.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 486.5
FF:10181-103D1 60 years, female 651.6
FF:10159-103A6 76 years, female 321.3

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM. Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.

Max subtype nTPMi

Max subtype nTPM is the value for the subtype with the largest average nTPM across the subtype samples.

364.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 254.7
Samples: 4

Max nTPM: 370.5
Min nTPM: 148.1
Sample A Female 370.5
Sample B Female 184.3
Sample C Male 148.1
Sample D Male 315.7
Ventral spinal cord
nTPM: 364.8
Samples: 4

Max nTPM: 458.2
Min nTPM: 265.9
Sample A Female 458.2
Sample B Female 355.0
Sample C Male 380.1
Sample D Male 265.9

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